View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_high_14 (Length: 305)
Name: NF16765_high_14
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 49425933 - 49426190
Alignment:
| Q |
1 |
atccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttcccca |
100 |
Q |
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| T |
49425933 |
atccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttcccca |
49426032 |
T |
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| Q |
101 |
aatgattcattaagacagttcaaaagctcccttcccattctcatagcagtatttttcaaaacttatcagacattttagaagtcagttctcagttctcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49426033 |
aatgattcattaagacagttcaaaagctcccttctcattctcatagcagtatttttcaaaacttatcagacattttagaagtcagttctcagttctcaca |
49426132 |
T |
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| Q |
201 |
cattttactctcctatcatgtggtcattcatggaatcagaatttagcaaacaactaac |
258 |
Q |
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| T |
49426133 |
cattttactctcctatcatgtggtcattcatggaatcagaatttagcatacaactaac |
49426190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 43363284 - 43363144
Alignment:
| Q |
1 |
atccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttcccca |
100 |
Q |
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|||||| ||||||||||||||||| |||| || |||||| ||||| |||||||||| | ||||||| |||||| ||||| || |||||| ||||||| |
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| T |
43363284 |
atcccttatgtcttgaaagttgaatctattaatcatctcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttcccca |
43363187 |
T |
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| Q |
101 |
aatgattcattaagacagttcaaaagctcccttcccattctca |
143 |
Q |
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| T |
43363186 |
aatgactcattaagacaattcaaaaacttccttctcattctca |
43363144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 49423777 - 49423904
Alignment:
| Q |
1 |
atccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttcccca |
100 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| || || |||||||| | ||||||||| |||||||| ||| ||||||||| ||||||| |
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| T |
49423777 |
atccctaatgtcttgaaagttgaatctatcaaccatctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttcccca |
49423876 |
T |
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| Q |
101 |
aatgattcattaagacagttcaaaagct |
128 |
Q |
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|||| | ||||||||||||||||||| |
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| T |
49423877 |
aatggcttgttaagacagttcaaaagct |
49423904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 49416802 - 49416720
Alignment:
| Q |
119 |
ttcaaaagctcccttcccattctcatagcagtatttttcaaaac-ttatcagacattttagaagtcagttctcagttctcaca |
200 |
Q |
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||||||||||||||| ||||||||| ||||||||||| ||||| |||| |||| | |||||||| ||| ||||||||||||| |
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| T |
49416802 |
ttcaaaagctcccttgtcattctcattgcagtattttttaaaactttattagacttattagaagtgagtactcagttctcaca |
49416720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17640995 - 17641049
Alignment:
| Q |
1 |
atccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaa |
55 |
Q |
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|||||||| |||||||||||||| |||| |||||| || ||||||||||||||| |
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| T |
17640995 |
atccctaaattcttgaaagttgaatctatcaaccatgtcctacatttagtttaaa |
17641049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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