View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16765_high_15 (Length: 296)

Name: NF16765_high_15
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16765_high_15
NF16765_high_15
[»] chr7 (2 HSPs)
chr7 (1-284)||(24065150-24065433)
chr7 (90-179)||(8847595-8847683)
[»] chr3 (3 HSPs)
chr3 (54-284)||(24674303-24674533)
chr3 (33-278)||(3137718-3137965)
chr3 (90-147)||(4648325-4648381)
[»] chr8 (3 HSPs)
chr8 (97-283)||(25241930-25242120)
chr8 (49-263)||(15939444-15939658)
chr8 (97-209)||(3947522-3947633)
[»] chr5 (3 HSPs)
chr5 (97-260)||(32569493-32569656)
chr5 (33-143)||(38629649-38629757)
chr5 (180-257)||(38629765-38629842)
[»] chr1 (1 HSPs)
chr1 (97-270)||(8754373-8754546)
[»] chr2 (3 HSPs)
chr2 (97-157)||(37673541-37673601)
chr2 (96-171)||(15913627-15913702)
chr2 (59-107)||(21811309-21811357)
[»] chr4 (1 HSPs)
chr4 (59-107)||(16984594-16984642)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 24065150 - 24065433
Alignment:
Q  1 aaaggaagatcgcaaaaatttctgcnnnnnnntgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaactatagataccatgtt 100  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065150 aaaggaaaatcgcaaaaatttctgcaaaaaaatgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaactatagataccatgtt 24065249  T
Q  101 atggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcctaatc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065250 atggaaagcaaaaaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcctaatc 24065349  T
Q  201 acatgctaatctactagattaaactaagtataactagctagcttgtaactcaagtaaactaggagaagtatctttattttgttc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065350 acatgctaatctactagattaaactaagtataactagctagcttgtaactcaagtaaactaggagaagtatctttattttgttc 24065433  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 8847683 - 8847595
Alignment:
Q  90 gataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatg 179  Q
    ||||||||||||||| ||||||| ||| ||||| | ||||||||||||||||||| || |||  ||||   | |||||||||||||||||    
T  8847683 gataccatgttatgggaagcaaataat-gaaaaaaatctcatttctcatagatgtgaatgtgtatacaagcaatatttataggcaatatg 8847595  T

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Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 24674533 - 24674303
Alignment:
Q  54 ctaacttccgccatggaaatgggaagaaaaactatagataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgag 153  Q
    ||||||||| ||||||||||| |||||||| || |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  24674533 ctaacttccaccatggaaatgagaagaaaagctctagataccatcttatggaaagcaaagaagagaaaataggctcatttctcatagatgtgaaagtgag 24674434  T
Q  154 tacatagagtatttataggcaatatgtaaagtacattaagcctaatcacatgctaatctactagattaaactaagtataactagctagcttgtaactcaa 253  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24674433 tacatagggtatttatatgcaatatgtaaagtacattaaacctagtcacatgctaatctactatattaaactaagtataactagctagcttgtaactcaa 24674334  T
Q  254 gtaaactaggagaagtatctttattttgttc 284  Q
    | || ||||||||||||||||||||||||||    
T  24674333 gcaatctaggagaagtatctttattttgttc 24674303  T

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Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 3137718 - 3137965
Alignment:
Q  33 tgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaa--ctatagataccatgttatggaaagcaaagaatagaaaatagtctca 130  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||  || ||||||||||||||||||||||||  |||||||||||||||||    
T  3137718 tgatgaagaatgaaactgtaactaactcccgccatggaaatgagaaaaaaaaagctctagataccatgttatggaaagcaagaaatagaaaatagtctca 3137817  T
Q  131 tttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcctaatcacatgctaatctactagattaaactaagta 230  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| |||||||    
T  3137818 tttctcatagatgtgaaagtgagtacattcagtatttataggcaatatgtaaagtacattaagcctaatgacatgttaatcaacttgattaagctaagta 3137917  T
Q  231 taactagctagcttgtaactcaagtaaactaggagaagtatctttatt 278  Q
      ||||||||||||||||||||||||||||||||||||| | ||||||    
T  3137918 agactagctagcttgtaactcaagtaaactaggagaagtgtgtttatt 3137965  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 4648325 - 4648381
Alignment:
Q  90 gataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaa 147  Q
    ||||||||||||||| ||||||| ||| ||||  | ||||||||||||||||||||||    
T  4648325 gataccatgttatgggaagcaaataat-gaaatgaatctcatttctcatagatgtaaa 4648381  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 25241930 - 25242120
Alignment:
Q  97 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacataga----gtatttataggcaatatgtaaagtacattaa 192  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||    |||||| ||| ||||||||||||||||||||    
T  25241930 tgttacggaaagaaaataatagaaaatagtctcatttctcatagatgtgaaagtaagtacattgatacggtatttttagtcaatatgtaaagtacattaa 25242029  T
Q  193 gcctaatcacatgctaatctactagattaaactaagtataactagctagcttgtaactcaagtaaactaggagaagtatctttattttgtt 283  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  25242030 gcctaatcacatgttaatctactagattaaactaattataactagctagcttgtaactcaagtaatctaggtgaagtctctttattttgtt 25242120  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 15939658 - 15939444
Alignment:
Q  49 tgtaactaacttccgccatggaaatgggaagaaaaactatagataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaa 148  Q
    |||||||||||| | ||||||||||| ||  |||  || ||||||||||||||||||||| ||  |||  | |||||||||| |||||||||||| |||     
T  15939658 tgtaactaactttctccatggaaatgagagaaaaggctctagataccatgttatggaaagtaagaaatgaataatagtctca-ttctcatagatggaaat 15939560  T
Q  149 gtgag-tacatagagtatttataggcaatatgtaaagtacattaagcctaatcacatgctaatctactagattaaactaagtataactagctagcttgta 247  Q
    ||||| || ||  ||||||||||| |||   ||| | |||| | |||||||| |||  ||||| |   ||| || | ||||| |||||||||||||||||    
T  15939559 gtgagttagatcaagtatttatagacaactagtatattacaattagcctaattacacactaatatgggagagtatagtaagtgtaactagctagcttgta 15939460  T
Q  248 actcaagtaaactagg 263  Q
     |||||||||||||||    
T  15939459 tctcaagtaaactagg 15939444  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 3947633 - 3947522
Alignment:
Q  97 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcct 196  Q
    |||||||||| ||||||  | ||||||  ||||||||||||||||||| |||||   |||||   || ||||||||||| |||||||||||| |||| ||    
T  3947633 tgttatggaatgcaaagtgt-gaaaatgatctcatttctcatagatgtgaaagtagttacattatgtttttataggcaaaatgtaaagtacaataagact 3947535  T
Q  197 aatcacatgctaa 209  Q
    ||  |||||||||    
T  3947534 aagtacatgctaa 3947522  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 260
Target Start/End: Complemental strand, 32569656 - 32569493
Alignment:
Q  97 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcct 196  Q
    |||||||||||| |||  ||||||| ||||||||||||||||||||| ||||| |||||||  | |||||||||| ||| |||||||||||||  | |||    
T  32569656 tgttatggaaagtaaaagatagaaagtagtctcatttctcatagatgaaaaagggagtacaatgtgtatttatagacaaaatgtaaagtacatagaacct 32569557  T
Q  197 aatcacatgctaatctactagattaaactaagtataactagctagcttgtaactcaagtaaact 260  Q
    ||||||||||||||  ||||||| ||||||| ||  ||||| |||||||| |||||||||||||    
T  32569556 aatcacatgctaatacactagatcaaactaattaagactagatagcttgtgactcaagtaaact 32569493  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 38629649 - 38629757
Alignment:
Q  33 tgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaactatagataccatgttatggaaagcaaagaatagaaaatagtctcatt 132  Q
    ||||||||||||||| |||||| ||||| | ||||||||||| |||  ||  || |||||||||||||||| ||||| ||  ||||||||||||||||||    
T  38629649 tgatgaagaatgaaattgtaacaaactttctccatggaaatgagaa--aatgctctagataccatgttatgaaaagctaaagatagaaaatagtctcatt 38629746  T
Q  133 tctcatagatg 143  Q
    |||||||||||    
T  38629747 tctcatagatg 38629757  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 38629765 - 38629842
Alignment:
Q  180 taaagtacattaagcctaatcacatgctaatctactagattaaactaagtataactagctagcttgtaactcaagtaa 257  Q
    |||||||||  || |||||||||||||||||  |||| ||||| |||| ||  | |||||||||||| ||||||||||    
T  38629765 taaagtacacaaatcctaatcacatgctaatacactaaattaagctaattaatagtagctagcttgtgactcaagtaa 38629842  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 8754546 - 8754373
Alignment:
Q  97 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtaca-tagagtatttataggcaatatgtaaagtacattaagcc 195  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||| |||||  |||||| ||| ||||||||||| ||  | |||||||||  || ||    
T  8754546 tgttatggaaagctaaagatagaaaatagtctcatttctcatagatgaaaaagatagtacaatag-gtatttataggaaaagtataaagtacacaaatcc 8754448  T
Q  196 taatcacatgctaatctactagattaaactaagtataactagctagcttgtaactcaagtaaactaggagaagta 270  Q
    |||||||||||||||  ||||||||||||||| ||  |||||||||||||| ||||||||||||| || ||||||    
T  8754447 taatcacatgctaatacactagattaaactaattaatactagctagcttgtgactcaagtaaacttggtgaagta 8754373  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 37673541 - 37673601
Alignment:
Q  97 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtaca 157  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  37673541 tgttacggaaagcaagaaatagaaaatagtctcatttctcatagatgtgaaagtgagtaca 37673601  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 15913627 - 15913702
Alignment:
Q  96 atgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttatag 171  Q
    |||||||||||||  |  ||| ||||||||  |||||| |||||||||| |||| |||||||||||||||||||||    
T  15913627 atgttatggaaagtgagaaatggaaaatagcttcatttgtcatagatgtgaaagagagtacatagagtatttatag 15913702  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 21811309 - 21811357
Alignment:
Q  59 ttccgccatggaaatgggaagaaaaactatagataccatgttatggaaa 107  Q
    ||||||||||||||||| ||||||| || |||||||||| |||| ||||    
T  21811309 ttccgccatggaaatggaaagaaaagctctagataccatattattgaaa 21811357  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16984642 - 16984594
Alignment:
Q  59 ttccgccatggaaatgggaagaaaaactatagataccatgttatggaaa 107  Q
    ||||||||||||||||| ||||||| || |||||||||| |||| ||||    
T  16984642 ttccgccatggaaatggaaagaaaagctctagataccatattattgaaa 16984594  T

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