View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_high_21 (Length: 251)
Name: NF16765_high_21
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 5677907 - 5678147
Alignment:
| Q |
11 |
caaaggacacgtccgagtcattagattctgagacgagtttccgaatgtatccacacttggagactaatggatactgcaacgaatttaattcatacacact |
110 |
Q |
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| T |
5677907 |
caaaggacacgtccgagtcattagattctgagacgagtttccgaatgtatccacacttggagactaatggatactgcaacgaatttaattcatacacact |
5678006 |
T |
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| Q |
111 |
gtcatataaagcttttttgcacttttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagnnnnnnnca |
210 |
Q |
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| T |
5678007 |
gtcatataaagtttttttgcacttttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagaaaaaaaca |
5678106 |
T |
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| Q |
211 |
tgacatgttttgtaacaaataaacattaacaattgattgac |
251 |
Q |
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| T |
5678107 |
tgacatgttttgtaacaaataaacattaacaattgattgac |
5678147 |
T |
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