View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_high_24 (Length: 220)
Name: NF16765_high_24
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40585391 - 40585172
Alignment:
| Q |
1 |
agcattgatgtattaacaggcacagaaatggctcagttagtttgtggaggatgccatactttactcatgtacatccgcggagcgacgagtgttcaatgct |
100 |
Q |
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| T |
40585391 |
agcattgatgtattcacaggcacagaaatggctcagttagtttgtggaggatgccatactttactcatgtacatccgcggagcaacaagtgttcaatgct |
40585292 |
T |
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| Q |
101 |
cttgttgtcacacagtcaatttagctctagaaggtattgannnnnnngttaataatctgatgagctttgttaaattgttgagtaaatttgcataatgaca |
200 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40585291 |
cttgttgtcacacagtcaatctagctctggaaggtattgatttttttgttaataatctcatgagctttgttaaattgttgagtaaatttgcataatgaca |
40585192 |
T |
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| Q |
201 |
gcttcaaaaacatgtttctt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40585191 |
gcttcaaaaacatgtttctt |
40585172 |
T |
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