View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_high_3 (Length: 430)
Name: NF16765_high_3
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 54682962 - 54682558
Alignment:
| Q |
17 |
atatataattgcggttttcaaaattgaattacttgtcaaataagtcgataaatgctgtattaaataacattaatttgacatgtatcacccttcttgttcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54682962 |
atatataattgcggttttcaaaattgaattacttgtcaaataagtcgataaatgatgtattaaataacattaatttgacatgtatcacccttcttgttcc |
54682863 |
T |
|
| Q |
117 |
ctcttctttcctaaaaaatcaatcatggagagagcttgttagccactttcttnnnnnnntctttacttaatttctaaggtgcatttttctacacaacata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
54682862 |
ctcttctttcctaaaaaatcaatcatggagagagcttgtaagccactttcttaaaaaaatcgttacttaatttctaaggtgcatttttctacacaacata |
54682763 |
T |
|
| Q |
217 |
ataggttttaatccgcatttcacatggagaagcattgtccaagctagaccggaagttattgataaagcaatcatgtggaggatagaaatgtgagaattta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54682762 |
ataggttttaatccgcatttcacatggagaagcattgtccaagctagaccggaagttattgataaagcaatcatgtggaggatagaaatgtgagaattta |
54682663 |
T |
|
| Q |
317 |
ggatagggatgaaagaagnnnnnnnnnccattcccacgagtgtccggagataaaagttgccacatgcataggatgaatagcttaacggacatccatgagt |
416 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54682662 |
ggatagggatgaaagaaagaaaaaaaaacattcccacgagtgtccggagataaaaattgccacatgcataggatgaatagcttaacggacatccatgagt |
54682563 |
T |
|
| Q |
417 |
ataat |
421 |
Q |
| |
|
||||| |
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| T |
54682562 |
ataat |
54682558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 37168593 - 37168999
Alignment:
| Q |
17 |
atatataattgcggttttcaaaattgaattacttgtcaaataagtcgataaatgctgtattaaataacattaatttgacatgtatcacccttcttgttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37168593 |
atatataattgcggttttcaaaattgaattacttgtcaaataagtcgataaatgctgtattaaataacattaatttgacatgtatcacccttcttgttcc |
37168692 |
T |
|
| Q |
117 |
ctcttctttcctaaaaaatcaatcatggagagagcttgttagccactttcttnnnnnnntctttacttaatttctaaggtgcatttttctacacaacata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| | |
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| T |
37168693 |
ctcttctttcctaaaaaatcaatcatggagagagcttgttagccactttcttaaaaaagtcgttacttaatttctaaggtacatttttctacacaacaga |
37168792 |
T |
|
| Q |
217 |
ataggttttaatccgcatttcacatggagaagcattgtccaagctagaccggaagtt-attgataaagcaatcatgtggaggatagaaatgtgagaattt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37168793 |
ataggttttaatccgcatttcacatggagaagcattgtccaagctagaccggaagttaattgataaagccatcatgtggaggatagaaatgtgagaattt |
37168892 |
T |
|
| Q |
316 |
aggatagggatgaaagaag-nnnnnnnnnccattcccacgagtgtccggagataaaagttgccacatgcataggatgaatagcttaacggacatccatga |
414 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37168893 |
aggatagggatgaaagaagaaaaaaaaaaccattcccacgagcgtccggagataaaagttgccacatgcatagggtgaatagcttaacggacatccatga |
37168992 |
T |
|
| Q |
415 |
gtataat |
421 |
Q |
| |
|
| ||||| |
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|
| T |
37168993 |
gaataat |
37168999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 20780884 - 20780952
Alignment:
| Q |
216 |
aataggttttaatccgcatttcacatggagaagcattgtccaagctagaccggaagttattgataaagc |
284 |
Q |
| |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20780884 |
aataggctttaatccgagtttcacgtggagaagcattgtccaagctagactggaagttattgataaagc |
20780952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 11804862 - 11804922
Alignment:
| Q |
216 |
aataggttttaatccgcatttcacatggagaagcattgtccaagctagaccggaagttatt |
276 |
Q |
| |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
11804862 |
aataggctttaatccgggtttcacgtggagaagcattgtccaagctagactggaagttatt |
11804922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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