View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16765_high_4 (Length: 429)
Name: NF16765_high_4
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 37399763 - 37399351
Alignment:
| Q |
1 |
aacaatgcaatgaatgcaaaaggtgtcattcttaacactttccaagaattagagcaagaggtattagatgcaatcaaaatgaaataccctcacctttacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37399763 |
aacaatgcaatgaatgcaaaaggtgtcattcttaacactttccaagaattagagcaagaggtattagatgcaatcaaaatgaaataccctcacctttacc |
37399664 |
T |
|
| Q |
101 |
ctattggtccattatccatgctgcatnnnnnnntttcaaattcaagttcaaataatcaattggattccattgattttaatttatggaaggaagatgttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37399663 |
ctattggtccattatccatgctgcataaaaaaaattcaaattcaagttcaaataatcaattggattccattgattttaatttatggaaggaagatgttaa |
37399564 |
T |
|
| Q |
201 |
ctgcatgaattggttggataaaaaagacaaaggttcagtggtttatgtgaattttgggagcttagtgattatgactaccaagcaattaagagagtttgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37399563 |
ctgcatgaattggttggataaaaaagacaaaggttcagtggtttatgtgaattttgggagcttagtgattatgactaccaagcaattaagagagtttgct |
37399464 |
T |
|
| Q |
301 |
tggggattagccaatagcaaatacaatttcttatgggtcattagacctaatcttgtggattgtggagatgaggtgatatcaaatgatgaatttatgaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37399463 |
tggggattagccaatagcaaatacaatttcttatgggtcattagacctaatcttgtggattgtggagatgaggtgatatcaaatgatgaatttatgaaag |
37399364 |
T |
|
| Q |
401 |
aaattgaaaatag |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37399363 |
aaattgaaaatag |
37399351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 4586140 - 4586075
Alignment:
| Q |
291 |
agagtttgcttggggattagccaatagcaaatacaatttcttatgggtcattagacctaatcttgt |
356 |
Q |
| |
|
||||||||||||||| || ||||||||||| | |||| |||||| ||||||||||| ||||||| |
|
|
| T |
4586140 |
agagtttgcttggggtttggccaatagcaagcaacattttttatggatcattagacctgatcttgt |
4586075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University