View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_1 (Length: 687)
Name: NF16765_low_1
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 8 - 674
Target Start/End: Complemental strand, 39559629 - 39558965
Alignment:
| Q |
8 |
cagcacagatataggttctcctnnnnnnncaacatgcaccaaattagtatcagaactcaagagagggttgaatgcacaatcaccacacatcaacatatga |
107 |
Q |
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| T |
39559629 |
cagcacagatataggttctcctaaaaaaacaacatgcactaaattagtatcagaactc--gagagggttgaatgcacaatcaccacacatcaacatatga |
39559532 |
T |
|
| Q |
108 |
aatatatgttggaactttgagtaagttgaatacaacatcttatggattccagtagcatatgaaaacaattcatatatacgagtttcaacaacactattag |
207 |
Q |
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| T |
39559531 |
aatatatgttggaactttgagtaagttgaatacaacatcttatggattccaatagcatatgaaaacaattcatatatacgagtttcaacaacactattag |
39559432 |
T |
|
| Q |
208 |
ataacattaattatcaaccgaaagatctatggttttgcaagagaggtcttttcattttgaattgccatttgaattgatactataaaggacctttctgata |
307 |
Q |
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| T |
39559431 |
ataacattaattatcaaccgaaagatctatggttttgcaagagaggtcttttcattttgaattgccatttgaattgatactataaagtacctttctgata |
39559332 |
T |
|
| Q |
308 |
ccgaagagttgattcatttgcttgcctaagtatatcttcaacattgtagttaatgaagaatcccatttgaagtgtaggttttgaggattcatcaacagca |
407 |
Q |
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| T |
39559331 |
ccgaagagttgattcatttgcttgcctaagtatatcttcaacattgtagttaatgaagaatcccatttgaagtgtaggttttgaggattcatcaacagca |
39559232 |
T |
|
| Q |
408 |
gctataaatctttctgcaacctgttcaaacaaagaagaattctgatgaataaataattaccgaagataaaatgaatttacgaaagcatatttattcaatg |
507 |
Q |
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| T |
39559231 |
gctataaatctttctgcaacctgttcaaacaaagaagaattctgatgtataaataattaccgaagataaaatgaatttacgaaagcatatttattcaatg |
39559132 |
T |
|
| Q |
508 |
taaaacttcgaacaataaaatatcaatgctttgcaaacnnnnnnnaatgacaaagtttttctgaaaaagtcaatgactaagaattaacacaataatggta |
607 |
Q |
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| T |
39559131 |
taaaacttcgaacaataaaatatcaatgttttgcaaacttgttttaatgacaaagtttttctgaaaaagtcaatgactaagaattaacacaataatggta |
39559032 |
T |
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| Q |
608 |
ggattaggacttgatgaaaaaatatctaagaaggtgaaagagcaataccatgtgtggtgttatatct |
674 |
Q |
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| T |
39559031 |
ggattaggacttgatgaaaaaatatctaagaaggtgaaagagcaataccatgtgtggtgttatatct |
39558965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 303 - 431
Target Start/End: Complemental strand, 44420211 - 44420083
Alignment:
| Q |
303 |
tgataccgaagagttgattcatttgcttgcctaagtatatcttcaacattgtagttaatgaagaatcccatttgaagtgtaggttttgaggattcatcaa |
402 |
Q |
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||||||||||||||||||||| ||||||| || |||||||| ||||||||||||| ||| || ||||||||||| |||| ||||||| |||||||||| |
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| T |
44420211 |
tgataccgaagagttgattcagttgcttgtcttagtatatcatcaacattgtagtgaataaaaaatcccatttggagtggaggttttatagattcatcaa |
44420112 |
T |
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| Q |
403 |
cagcagctataaatctttctgcaacctgt |
431 |
Q |
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| T |
44420111 |
ttgcagcaacaaagctttccgcaacctgt |
44420083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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