View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16765_low_11 (Length: 362)
Name: NF16765_low_11
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_11 |
 | |
|
| [»] scaffold1178 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 32850521 - 32850868
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaacaccctctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32850521 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaacaccctctc |
32850620 |
T |
|
| Q |
101 |
ttaatttgtaattttcatattatctttgaactgttcaagcttctcaatgggcactgctttggtgagaacatctgctggctgttccgtggtcttgatgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32850621 |
ttaatttgtaattttcatattatctttgaactgttcaagcttctcaatgggcactgctttggtgagaacatctgctggctgttccgtggtcttgatgtat |
32850720 |
T |
|
| Q |
201 |
tctaagttgatttccttcctttgaaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgaaaaactggattcttggacattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32850721 |
tctaagttgatttccttcctttgaaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgagaaactggattcttggacattg |
32850820 |
T |
|
| Q |
301 |
aaattgctgattggttgtcacagaaaataggagttggatcttctacct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32850821 |
aaattgctgattggttgtcacagaaaataggagttggatcttctacct |
32850868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 37173664 - 37174011
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaacaccctctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37173664 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatgaaaaattacaaattatcatttaacaccctctc |
37173763 |
T |
|
| Q |
101 |
ttaatttgtaattttcatattatctttgaactgttcaagcttctcaatgggcactgctttggtgagaacatctgctggctgttccgtggtcttgatgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37173764 |
ttaatttgtaattttcatattatctttgaactgttcaagcatctcaatgggcactgctttggtgagaacatctgctggctgttccgtggtcttgatgtat |
37173863 |
T |
|
| Q |
201 |
tctaagttgatttccttcctttgaaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgaaaaactggattcttggacattg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37173864 |
tctaagttgatttccgtcctttgaaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgaaaaactggattcttggacattg |
37173963 |
T |
|
| Q |
301 |
aaattgctgattggttgtcacagaaaataggagttggatcttctacct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37173964 |
aaattgctgattggttgtcacagaaaataggagttggatcttctacct |
37174011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 37177955 - 37178047
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37177955 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca |
37178047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32854816 - 32854908
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32854816 |
aatgcacctaggaatattaaatgacattctctgaaacttactgatacattaaggaacctaggaatatggaaaatttcaaattatcatttaaca |
32854908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1178 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold1178
Description:
Target: scaffold1178; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2219 - 2527
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacat--------------------taaggaacctaggaatatggaaaattacaaa |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2219 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacatgaatagacttttagatatattaaggaacctaggaatatggaaaattacaaa |
2318 |
T |
|
| Q |
81 |
ttatcatttaacaccctctcttaatttgtaattttcatattatctttgaactgttcaagcttctcaatgggcactgctttggtgagaacatctgctggct |
180 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319 |
ttatcatttaacaccctttcttaatttgtaactttcatattatctttgaacttttcaagcttctcaatgggcactgctttggtgagaacatctgctggct |
2418 |
T |
|
| Q |
181 |
gttccgtggtcttgatgtattctaagttgatttccttcctttgaaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgaaa |
280 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2419 |
gctccgtggtcttgatgtattctaagttgatttccttcctttgaaccatatcaggaatgtagttgtggcgcagctcaatattctttgaccttccatgaaa |
2518 |
T |
|
| Q |
281 |
aactggatt |
289 |
Q |
| |
|
||||||||| |
|
|
| T |
2519 |
aactggatt |
2527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 98 - 330
Target Start/End: Complemental strand, 18408569 - 18408337
Alignment:
| Q |
98 |
ctcttaatttgtaattttcatattatctttgaactgttcaagcttctcaatgggcactgctttggtgagaacatctgctggctgttccgtggtcttgatg |
197 |
Q |
| |
|
|||| ||||||||||||||| | | |||||||||||||||||||||||||||| | ||||||| | ||||||||||| ||||||| | |||||||| |
|
|
| T |
18408569 |
ctctgaatttgtaattttcacaatgtctttgaactgttcaagcttctcaatggatattgctttgcttagaacatctgcaggctgttttgcattcttgatg |
18408470 |
T |
|
| Q |
198 |
tattctaagttgatttccttcctttgaaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgaaaaactggattcttggaca |
297 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
18408469 |
tattgcaagctgatttccttcttttgaaccatatcaggaatgtagttgtggcgcaactcgatatgttttgatcttccatgaaatactggattcttggaca |
18408370 |
T |
|
| Q |
298 |
ttgaaattgctgattggttgtcacagaaaatag |
330 |
Q |
| |
|
||||||||| |||||| ||| || | ||||||| |
|
|
| T |
18408369 |
ttgaaattgttgattgattgacataaaaaatag |
18408337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 18414344 - 18414276
Alignment:
| Q |
28 |
tctctggaacttactgatacattaa-ggaacctaggaatatggaaaattacaaattatcatttaacacc |
95 |
Q |
| |
|
||||| ||||||| ||||||| || |||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
18414344 |
tctctagaacttatagatacatgaatggaacctaggaatatgaaaaattgcaaattataatttaacacc |
18414276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39163901 - 39163994
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39163901 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac |
39163994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4479779 - 4479871
Alignment:
| Q |
1 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4479779 |
aatgcacctaggaatattaaatgacattctctggaacttactgatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca |
4479871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 14434517 - 14434466
Alignment:
| Q |
43 |
gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac |
94 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14434517 |
gatacattaatgaacctaggaatatggaaaattacaaattatcatttaacac |
14434466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 2016812 - 2016645
Alignment:
| Q |
47 |
cattaaggaacctaggaatatggaaaattacaaattatcatttaacaccctctcttaatttgtaattttcatattatctttgaactgttcaagcttctca |
146 |
Q |
| |
|
||||||| ||| |||||||||| ||| || ||| |||||||||||||||| || ||| |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2016812 |
cattaagaaacttaggaatatgaaaagttgcaa-ttatcatttaacaccccttcgtaaattgtaattttcataataattttgaactgttcaagcttctca |
2016714 |
T |
|
| Q |
147 |
atgggcactgctttggtgagaacatctgctggctgttccgtggtcttgatgtattctaagttgatttcc |
215 |
Q |
| |
|
|||| || ||| ||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2016713 |
atggacattgcattggtgagaacatttgctcactgttgtgtggtcttgatgtattctaagtcgatttcc |
2016645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 2009572 - 2009309
Alignment:
| Q |
43 |
gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacaccctctcttaatttgta---attttcatattatctttgaactgttcaag |
139 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||| ||| |||||||||||||||| |||||| ||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
2009572 |
gatacattagggaacttaggaatatgaaaaatttcaa-ttatcatttaacaccccttcttaaattgtactaattttcataatatttttgaactgttcaag |
2009474 |
T |
|
| Q |
140 |
cttctcaatgggcactgctttggtgagaac-----atctgctggctgttccgtggtcttgatgtat-----------tctaagttgatttccttcctttg |
223 |
Q |
| |
|
||||||||| | ||| ||||||||||| || |||| |||||| |||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
2009473 |
cttctcaataaatattgcattggtgagaacatttaatttgctcgctgttgtgtggtcttgatgcattctattctaactctaagttgatttcctttctttg |
2009374 |
T |
|
| Q |
224 |
aaccatatcacgaatgtagttgtggcgcagctcaatatgctttgaccttccatgaaaaactggattc |
290 |
Q |
| |
|
|||||||| || || || |||||| |||| |||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
2009373 |
aaccatattaccaa--tatttgtggtgcagttcaatatgttttgaccttccatgaacaactgaattc |
2009309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 2016644 - 2016590
Alignment:
| Q |
236 |
aatgtagttgtggcgcagctcaatatgctttgaccttccatgaaaaactggattc |
290 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
2016644 |
aatgtagttgtggcacaactcaatatgctttgaccttccatgaatatctggattc |
2016590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 30782334 - 30782385
Alignment:
| Q |
43 |
gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782334 |
gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacac |
30782385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University