View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_14 (Length: 312)
Name: NF16765_low_14
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 38261777 - 38261989
Alignment:
| Q |
18 |
gaagctagggttcaataagattgcaattgacgagaataacaaatacaaaacaataaagtaaatatatacacaactagcaaaagggaactactgttaagta |
117 |
Q |
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| T |
38261777 |
gaagctagggttcaataagattgcaattgacgagaataacaaatacaaaacaataaagtaaatatatacacaactagcaaaagggaactactattaagta |
38261876 |
T |
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| Q |
118 |
gagtaaataaataaagacatgaaagtcctattgtttagcactcctcaaactcacaaagcattaatgggaagcatcaagagtttgctggttagaaagcgaa |
217 |
Q |
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| T |
38261877 |
gagtaaataaataaagacatgaaagtcctattgtttagcactcctcaaactcacaaagcattaatgggaagcatcaagagtttgctggttagaaagcgaa |
38261976 |
T |
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| Q |
218 |
aatattcaacgta |
230 |
Q |
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| T |
38261977 |
aatgttcaacgta |
38261989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 38262127 - 38262211
Alignment:
| Q |
228 |
gtaattgattagactcgaaaatggacaaaacaacaaaaccaatttaattggatttttgggttcatggagtcgttagtttgattct |
312 |
Q |
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| T |
38262127 |
gtaattgattagactcgaaaatggacaaaacaacaaaaccaatttaattggatttttgggttcatggagtcattagtttgattct |
38262211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 38240792 - 38240870
Alignment:
| Q |
21 |
gctagggttcaataagattgcaattgacgagaataacaaatacaaaacaataaagtaaatatatacacaactagcaaaa |
99 |
Q |
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| T |
38240792 |
gctagagttcaataagaccgcaattggctagaataatgaatacagaacaatagagtaagtatatacacaataagcaaaa |
38240870 |
T |
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