View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16765_low_17 (Length: 293)

Name: NF16765_low_17
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16765_low_17
NF16765_low_17
[»] chr1 (7 HSPs)
chr1 (13-275)||(4643886-4644148)
chr1 (118-255)||(49952531-49952666)
chr1 (187-246)||(1749870-1749928)
chr1 (22-64)||(3028050-3028092)
chr1 (19-64)||(21620362-21620407)
chr1 (19-64)||(45360493-45360538)
chr1 (204-268)||(46281785-46281849)
[»] chr4 (8 HSPs)
chr4 (123-255)||(11696418-11696548)
chr4 (190-247)||(6495278-6495335)
chr4 (22-64)||(44506440-44506482)
chr4 (187-247)||(50764497-50764557)
chr4 (187-230)||(5587699-5587742)
chr4 (22-64)||(24072700-24072742)
chr4 (23-64)||(26696152-26696193)
chr4 (187-247)||(13719271-13719331)
[»] scaffold0200 (1 HSPs)
scaffold0200 (178-238)||(25789-25849)
[»] chr7 (6 HSPs)
chr7 (122-237)||(49052306-49052421)
chr7 (22-64)||(31293332-31293374)
chr7 (13-64)||(22916520-22916571)
chr7 (23-73)||(30586371-30586421)
chr7 (19-64)||(31578048-31578093)
chr7 (19-64)||(44080158-44080203)
[»] chr3 (6 HSPs)
chr3 (179-255)||(50174017-50174093)
chr3 (10-64)||(11685586-11685640)
chr3 (22-64)||(30800860-30800902)
chr3 (187-222)||(7232489-7232524)
chr3 (23-64)||(28246709-28246750)
chr3 (19-64)||(37608938-37608983)
[»] chr6 (1 HSPs)
chr6 (187-247)||(8984054-8984114)
[»] chr8 (3 HSPs)
chr8 (23-64)||(35563588-35563629)
chr8 (22-64)||(18915985-18916027)
chr8 (194-247)||(23812282-23812335)
[»] chr5 (4 HSPs)
chr5 (123-253)||(27994586-27994707)
chr5 (145-201)||(5302069-5302125)
chr5 (19-64)||(22213588-22213633)
chr5 (187-247)||(28979067-28979127)
[»] chr2 (3 HSPs)
chr2 (19-74)||(34580284-34580339)
chr2 (22-64)||(15805596-15805638)
chr2 (22-64)||(32597679-32597721)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 4643886 - 4644148
Alignment:
Q  13 attctttaaccatgtattcccgaaaatatcattcttaaccttaaaacaaacatctcctaaatccataactaaagctgtgtgtgtatttatcccaatacat 112  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  4643886 attctttagccatgtattcccgaaaatgtcattcttaaccttgaaacaaacatctcctaaatccataactaaagttgtgtgtgtatttatcccaatatat 4643985  T
Q  113 caatctagaaaaaatcttgtatgaagacacaatcacatatcaatatcatttaggcactcttatagtaaatgagcaaaatttaagaaaaaatatttagtca 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4643986 caatctagaaaaaatcttgtatgaacacacaatcacatatcaatatcatttaggcactcttatactaaatgagcaaaatttaagaaaaaatatttagtca 4644085  T
Q  213 tatcaattaatattattcgattttatactcttttaaattttttgatcttatgtgtgcccaaac 275  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4644086 tatcaattgatattattcaattttatactcttttaaattttttgatcttatgtgtgcccaaac 4644148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 49952531 - 49952666
Alignment:
Q  118 tagaaaaaatcttgtatgaagacacaatcacatatcaatatcatttaggcactcttatagtaaatgagcaaaatttaagaaaaaatatttagtcatatca 217  Q
    |||| ||||||||||| |  ||| |||||||| || ||||||||||||| ||||| | | ||||||| ||||||||||| |||| |||||||||| ||||    
T  49952531 tagagaaaatcttgtacg--gacccaatcacaaataaatatcatttaggtactctcacattaaatgaacaaaatttaagtaaaagtatttagtcacatca 49952628  T
Q  218 attaatattattcgattttatactcttttaaatttttt 255  Q
    ||||  | ||||| |||| || |||||||| |||||||    
T  49952629 attagcactattcaatttcattctcttttatatttttt 49952666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 1749928 - 1749870
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttatactctttt 246  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||| ||||||| |||||||    
T  1749928 aaaaattaagaaaaaata-ttagtcaaatcaattaacattattcaattttattctctttt 1749870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 3028050 - 3028092
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||||| ||||||||||| |||||| |||||||||    
T  3028050 ccatgtattcccgagaatatcattctcaaccttgaaacaaaca 3028092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 21620362 - 21620407
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||||||  ||| |||||||||||||| |||||||||    
T  21620362 taaccatgtattcccgggaatgtcattcttaaccttgaaacaaaca 21620407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 45360493 - 45360538
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||||||  ||| |||||||||||||| |||||||||    
T  45360493 taaccatgtattcccgggaatgtcattcttaaccttgaaacaaaca 45360538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 46281849 - 46281785
Alignment:
Q  204 atttagtcatatcaattaatattattcgattttatactcttttaaattttttgatcttatgtgtg 268  Q
    |||| |||| |||||||||||| |||  ||||||| |||||||||||||||| || |||| ||||    
T  46281849 attttgtcaaatcaattaatatcattgaattttattctcttttaaattttttcattttatctgtg 46281785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 11696548 - 11696418
Alignment:
Q  123 aaaatcttgtatgaagacacaatcacatatcaatatcatttaggcactcttatagtaaatgagcaaaatttaagaaaaaatatttagtcatatcaattaa 222  Q
    ||||||||||||  ||||||||||||| || ||||||||||||||||||| | | |||| || ||||||||||| |||| |||||||| | |||||| |     
T  11696548 aaaatcttgtat--agacacaatcacaaataaatatcatttaggcactctcacattaaacgaacaaaatttaagtaaaagtatttagttacatcaatcag 11696451  T
Q  223 tattattcgattttatactcttttaaatttttt 255  Q
     | ||||| ||||||| |||||||| |||||||    
T  11696450 cactattcaattttattctcttttatatttttt 11696418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 6495278 - 6495335
Alignment:
Q  190 atttaagaaaaaatatttagtcatatcaattaatattattcgattttatactctttta 247  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||    
T  6495278 atttaagaaaaaatatttagtcatatcaattgatattattcaattttattctatttta 6495335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 44506440 - 44506482
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  44506440 ccatgtattcccgaaaatgtcattcttaaccttgaaacaaaca 44506482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 50764497 - 50764557
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttatactctttta 247  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||  ||||| | ||||||||    
T  50764497 aaaatttaagaaaaaatatttaatcaaatcaattgatattattttattttgttctctttta 50764557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 5587699 - 5587742
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaatattattc 230  Q
    |||||||||||||||||||||||||| ||||||| | |||||||    
T  5587699 aaaatttaagaaaaaatatttagtcaaatcaattgacattattc 5587742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 24072700 - 24072742
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||||  |||||||||||||||||| |||||||||    
T  24072700 ccatgtattcccgggaatatcattcttaaccttgaaacaaaca 24072742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 26696152 - 26696193
Alignment:
Q  23 catgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||  |||||||||||||||||| |||||||||    
T  26696152 catgtattcccgggaatatcattcttaaccttgaaacaaaca 26696193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 13719271 - 13719331
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttatactctttta 247  Q
    |||||| ||||||||||||||||||||||| ||| | ||||||| ||| | | ||||||||    
T  13719271 aaaattaaagaaaaaatatttagtcatatcgattgacattattcaattgtgttctctttta 13719331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 25789 - 25849
Alignment:
Q  178 taaatgagcaaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  25789 taaatgagcaaaatttaagaaaaaatatttagtcatatcaattgacattattcaattttat 25849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 49052306 - 49052421
Alignment:
Q  122 aaaaatcttgtatgaagacacaatcacatatcaatatcatttaggcactcttatagtaaatgagcaaaatttaag--aaaaaatatttagtcatatcaat 219  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||  || | | | |||||||| ||| ||||||  |||||||||||||||| ||||||    
T  49052306 aaaaatcttgtatg--gacacaatcacaaatcaatatcatttaggtcctttcacattaaatgagtaaagtttaagaaaaaaaatatttagtcacatcaat 49052403  T
Q  220 taatattattcgatttta 237  Q
    | | ||||||| ||||||    
T  49052404 tgacattattcaatttta 49052421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 31293332 - 31293374
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  31293332 ccatgtatttccgaaaatgtcattcttaaccttaaaacaaaca 31293374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 22916571 - 22916520
Alignment:
Q  13 attctttaaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||| |||||||||||||||  |||| |||||||||||||| |||||||||    
T  22916571 attctctaaccatgtattcccagaaatgtcattcttaaccttgaaacaaaca 22916520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 30586371 - 30586421
Alignment:
Q  23 catgtattcccgaaaatatcattcttaaccttaaaacaaacatctcctaaa 73  Q
    |||||||||||| |||| |||||||||||||| ||||||||| | ||||||    
T  30586371 catgtattcccggaaatgtcattcttaaccttgaaacaaacaccccctaaa 30586421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31578048 - 31578093
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||| |||| ||| |||||||||||||| |||||||||    
T  31578048 taaccatgtatttccgagaatgtcattcttaaccttgaaacaaaca 31578093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 44080158 - 44080203
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||||||  ||| |||||||||||||||||| |||||    
T  44080158 taaccatgtattcccgggaatgtcattcttaaccttaaaagaaaca 44080203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 50174093 - 50174017
Alignment:
Q  179 aaatgagcaaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttatactcttttaaatttttt 255  Q
    |||||| ||||||||||||||||  ||||||||| ||||||| | ||||||| ||||||| ||||||| ||||||||    
T  50174093 aaatgaacaaaatttaagaaaaataatttagtcacatcaattgacattattcaattttattctcttttcaatttttt 50174017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 11685640 - 11685586
Alignment:
Q  10 attattctttaaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||| ||| |||||||||||||| ||| |||||||||||||| |||||||||    
T  11685640 attattccttagccatgtattcccgataatgtcattcttaaccttgaaacaaaca 11685586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 30800902 - 30800860
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  30800902 ccatgtattcccgaaaatgtcattcttaaccttgaaacaaaca 30800860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 7232489 - 7232524
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaa 222  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7232489 aaaatttaagaaaaaatatttaggcatatcaattaa 7232524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 28246750 - 28246709
Alignment:
Q  23 catgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  28246750 catgtattcccggaaatgtcattcttaaccttgaaacaaaca 28246709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 37608983 - 37608938
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||||||| ||||||| |||||||| || |||||||||    
T  37608983 taaccatgtattcccggaaatatcgttcttaacattgaaacaaaca 37608938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 8984114 - 8984054
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttatactctttta 247  Q
    |||||| ||||||||||||||||||||||||||| |  | |||||||||||| ||||||||    
T  8984114 aaaattaaagaaaaaatatttagtcatatcaattgacttcattcgattttattctctttta 8984054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 35563629 - 35563588
Alignment:
Q  23 catgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  35563629 catgtattcccggaaatatcattcttaaccttgaaacaaaca 35563588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 18916027 - 18915985
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  18916027 ccatgtattcccggaaatgtcattcttaaccttgaaacaaaca 18915985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 23812282 - 23812335
Alignment:
Q  194 aagaaaaaatatttagtcatatcaattaatattattcgattttatactctttta 247  Q
    ||||||||||||||| ||||||||||| | ||||||  ||||||| ||||||||    
T  23812282 aagaaaaaatatttaatcatatcaattgacattattttattttattctctttta 23812335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 27994586 - 27994707
Alignment:
Q  123 aaaatcttgtatgaagacacaatcacatatcaatatcatttaggcactcttatagtaaatgagcaaaatttaagaaaaaatatttagtcatatcaattaa 222  Q
    ||||||||||||||   |||||||| | || ||||||||||||||||||| |      |||| ||||||||||| |||| |||||| |||||| |||||     
T  27994586 aaaatcttgtatga---cacaatcataaataaatatcatttaggcactctca------atgaacaaaatttaagtaaaagtatttaatcatattaattag 27994676  T
Q  223 tattattcgattttatactcttttaaatttt 253  Q
     | ||||| ||||||| |||||||| |||||    
T  27994677 cactattcaattttattctcttttatatttt 27994707  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 5302125 - 5302069
Alignment:
Q  145 tcacatatcaatatcatttaggcactcttatagtaaatgagcaaaatttaagaaaaa 201  Q
    ||||| |||||| | ||||||||||||| | | ||||||||||||||||||||||||    
T  5302125 tcacaaatcaatgttatttaggcactctcacattaaatgagcaaaatttaagaaaaa 5302069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 22213588 - 22213633
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||||||  ||| |||||||||||||| |||||||||    
T  22213588 taaccatgtattcccgggaatgtcattcttaaccttgaaacaaaca 22213633  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 28979067 - 28979127
Alignment:
Q  187 aaaatttaagaaaaaatatttagtcatatcaattaatattattcgattttatactctttta 247  Q
    |||||| ||||||||||||||| ||||||||||| |  |||||| |||||||  |||||||    
T  28979067 aaaattaaagaaaaaatatttaatcatatcaattgactttattcaattttattatctttta 28979127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 34580284 - 34580339
Alignment:
Q  19 taaccatgtattcccgaaaatatcattcttaaccttaaaacaaacatctcctaaat 74  Q
    ||||||||||||||||  ||| |||||||||||||| ||||||||| | |||||||    
T  34580284 taaccatgtattcccgggaatgtcattcttaaccttgaaacaaacaccccctaaat 34580339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 15805638 - 15805596
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  15805638 ccatgtattcccggaaatgtcattcttaaccttgaaacaaaca 15805596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 32597679 - 32597721
Alignment:
Q  22 ccatgtattcccgaaaatatcattcttaaccttaaaacaaaca 64  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  32597679 ccatgtattcccggaaatgtcattcttaaccttgaaacaaaca 32597721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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