View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_2 (Length: 451)
Name: NF16765_low_2
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 2173583 - 2173165
Alignment:
| Q |
18 |
gaagttgagagagactttgtcagaaatgctcagtcatttccctatagttactggaaggttgttaggagatgaaatgggacattggaagatcaaatgcaat |
117 |
Q |
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| T |
2173583 |
gaagttgagagagactttgtcagaaatgctcagtcatttccctatagttactggaaggttgttgagagatgaaatgggacattggaagatcaaatgcaat |
2173484 |
T |
|
| Q |
118 |
gatgctggtgttagaatggtcgaggcaaaagccaaaggaagtgtcgaagagtggttacgaagcgtggatagggaaaaagaacttaaacttgtttattggg |
217 |
Q |
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| T |
2173483 |
gatgctggtgttagaatggtcgaggcaaaagccaaaggaagtgtcgaagagtggttacgaagcgtggatagggaaaaagaacttaaacttgtttattggg |
2173384 |
T |
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| Q |
218 |
aagatatgcttcaaaagccttattattggtccactttttatgtccaggtttgaattttctgtactgaaaaatgcttttgatgagatatattaagagattt |
317 |
Q |
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| T |
2173383 |
aagatatgcttcaaaagccttattattggtccactttttatgtccaggtttgaattttctgtactgaaaaatgcttttgatgagatatattaagagattt |
2173284 |
T |
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| Q |
318 |
aaagatcttaatagcaaataaataatacactctttttcaatttttaagtatattcatgcttcaatatgatcatcttaataattgaatcagcttcttgtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2173283 |
aaagatcttaatagcaaataaataatacactctttttcaatttttaagtatattcatgcttcaatatgatcatcttaataattgaatcagcttcttgtta |
2173184 |
T |
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| Q |
418 |
acatttttgtgagataaat |
436 |
Q |
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|||||||||| |||||||| |
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| T |
2173183 |
acatttttgtcagataaat |
2173165 |
T |
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