View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_21 (Length: 251)
Name: NF16765_low_21
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 38262434 - 38262194
Alignment:
| Q |
11 |
agatgaacttgtttatgacacttcctcatattttcgggattctgatttctcatttgaatagctaaaaccaagacaagagtatgtaagaaatataatctat |
110 |
Q |
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| T |
38262434 |
agatgaacttgtttatgacacttcctcatattttcgggattctgatttctcatttgaatagctaaaaccaagacaagagtatgtaagaaatataatctat |
38262335 |
T |
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| Q |
111 |
tttccaaactttaaatgattatatgcaacacaaattttatgctatttaggttaagtgtaagaattaaactaatttgcaacaaaaaatttatgctatttat |
210 |
Q |
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| T |
38262334 |
tttccaaactttaaatgattatatgcaacacaaatttcatgctatttaggttaagtgtaagaattaaactaatttgcaacaaaaaaattatgctatttat |
38262235 |
T |
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| Q |
211 |
attatgcatctagcttaattgtaagaatcaaactaatgact |
251 |
Q |
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| T |
38262234 |
actatgcatctagcttaattgtaagaatcaaactaatgact |
38262194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 38241192 - 38241104
Alignment:
| Q |
20 |
tgtttatgacacttcctcatattttcgggattctgatttctcatttgaatagctaaaaccaagacaagagtatgtaagaaatataatct |
108 |
Q |
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| T |
38241192 |
tgtttctgacacttcctcagattttcgggattctgatttctcatttgaatacctagaaacaaaacaagattttgtatgaaatagaatct |
38241104 |
T |
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