View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_23 (Length: 244)
Name: NF16765_low_23
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 4482796 - 4483008
Alignment:
| Q |
12 |
agcagcacagatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg |
111 |
Q |
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| T |
4482796 |
agcaccacaaatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg |
4482895 |
T |
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| Q |
112 |
ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttttattaaacacttagaaaagtgaagggtgattactctac |
211 |
Q |
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| T |
4482896 |
ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaagg-ttttattaaacactttgaaaagtgaagcgtgattactctac |
4482994 |
T |
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| Q |
212 |
tcggaattaatttt |
225 |
Q |
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|||||||||||||| |
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| T |
4482995 |
tcggaattaatttt |
4483008 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 42796343 - 42796311
Alignment:
| Q |
94 |
ccaaatgtcactgctgggttaatgtgaccacct |
126 |
Q |
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| T |
42796343 |
ccaaatgtcactgctgggttaatgtgaccacct |
42796311 |
T |
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