View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_26 (Length: 218)
Name: NF16765_low_26
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 5678424 - 5678234
Alignment:
| Q |
17 |
atatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttgtattgcttaat |
116 |
Q |
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| T |
5678424 |
atatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttgtattgcttaat |
5678325 |
T |
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| Q |
117 |
tataggattttttctcaggagattccaagtgatgtcaatgtccaaattggagaatcttcctttactttacataaggtagtggctctgtgct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
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| T |
5678324 |
tataggattttttctcaggagattccaagtgatgtcaatgtccaaattggtgaatcttcctttactttacataaggtagtgactctttgct |
5678234 |
T |
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