View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_27 (Length: 215)
Name: NF16765_low_27
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 49423735 - 49423529
Alignment:
| Q |
1 |
gcaatatcacgttacaacttcatgcactcgagcaaattatttcatgaaatataaaagcaacagacacacaaacaccaagctcacagaagcctttctaact |
100 |
Q |
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| T |
49423735 |
gcaatatcacgttacaacttcatgcactcgagcaaattatttcatgaaatataaaagcaacagacacacaaacaccaagctcacagaagcctttctaact |
49423636 |
T |
|
| Q |
101 |
gccatgactcgatttacagcatggacaaagattaaacgagtagttgatctcccaaactattcccatcaattgatttttgcccgctgagtttaaataatgg |
200 |
Q |
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| T |
49423635 |
gccatgactcgatttacagcatggacaaagattaaacgagtagttgatctcccaaactatttccatcaattgatttttgcccgctgagtttaaataatgg |
49423536 |
T |
|
| Q |
201 |
ttcatct |
207 |
Q |
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||||||| |
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| T |
49423535 |
ttcatct |
49423529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 49432085 - 49431982
Alignment:
| Q |
67 |
cacaaacaccaagctcacagaagcctttctaactgccatgactcgatttacagcatggacaaagattaaacgagtagttgatctcccaaactattcccat |
166 |
Q |
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||||||||| ||||| ||||| ||| ||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||||||||||| ||| ||| |
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| T |
49432085 |
cacaaacacgaagctg-cagaatcctatctaactgccatgactc-atttaaagcatgtacaaaaaataaacgagtagttgatctcccaaacaattttcat |
49431988 |
T |
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| Q |
167 |
caattg |
172 |
Q |
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|||||| |
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| T |
49431987 |
caattg |
49431982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 49425892 - 49425826
Alignment:
| Q |
1 |
gcaatatcacgttacaacttcatgcactcgagcaaattatttcatgaaatataaaagcaacagacac |
67 |
Q |
| |
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||||| ||| |||||||||||||| |||||||||||||||||||| ||| |||||||| ||| |||| |
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| T |
49425892 |
gcaatgtcatgttacaacttcatgtactcgagcaaattatttcataaaacataaaagccacaaacac |
49425826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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