View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_5 (Length: 427)
Name: NF16765_low_5
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 141 - 410
Target Start/End: Original strand, 32796452 - 32796723
Alignment:
| Q |
141 |
acttatttacaaatatttaaaagtcttgcctatacagtatagacatgcatttatattttatatttacctattaatta--catgacaaatgtataacctaa |
238 |
Q |
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| T |
32796452 |
acttatttacaaatatctaaaagtcttgcttatacagtatagacatgcatttatattttatatttacctattaattatccatgacaaatgtataacctaa |
32796551 |
T |
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| Q |
239 |
tattgcaatttgcatgggttaggtgacaatttggacccgccacccacacatgtgtgtcttatcattcagtgttgttcgatatgtttggctttgattaata |
338 |
Q |
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| T |
32796552 |
tattgcaatttgcatgggttaggtgacaatttggacccgccacccacacatgtgtgtcttatcatgcagtgttgttcgatatgtttggctttgattaata |
32796651 |
T |
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| Q |
339 |
acattttgacccctgttttgcaatcaaacaactcgaatcactataaaatgtatcaaaggtctagattgtagt |
410 |
Q |
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| T |
32796652 |
acattttgatccatgttttgcaatcaaacaactcgaatcactataaaatgtatcaaaggtctagattgtagt |
32796723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 32796274 - 32796431
Alignment:
| Q |
1 |
gaatgttggtaaatctgagtacttgtgcgttgggagaagcatatttctaaaatttgtgtcttcttgtgttgtgtccatgttttatgacaaataaatttag |
100 |
Q |
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| T |
32796274 |
gaatgttggtaaatctgagtacttgtgcgttgggagaagcatatttctaaaatttgtgtcttcttgtgttgtgtccatgttttatgacaaataaatttag |
32796373 |
T |
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| Q |
101 |
aaatattttggtactacgctttgaagttcaaagaaaatatacttatttacaaatattt |
158 |
Q |
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| T |
32796374 |
aaatattttggtactacgctttgaagttcaaagagaatatacttatttacaaatattt |
32796431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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