View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_7 (Length: 410)
Name: NF16765_low_7
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 10887768 - 10887413
Alignment:
| Q |
42 |
taggttaggtatactttgtattattatctggggcacgtgaaactgtttttaactgcctgatagaccaagttgtatgaagtaccttttcaattggaataag |
141 |
Q |
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| T |
10887768 |
taggttaggtatactttgtattattatctggggcacgtgaaactgtttttaactgccttatacaccaagttgtatgaagtaccttttcaattggaataag |
10887669 |
T |
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| Q |
142 |
ggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaatgatgtgcatacagctcttttagtgcaggccattctagcttatgtaga |
241 |
Q |
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| T |
10887668 |
ggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaaggatgtgcatgcagctcttttagtgcaggccattctagcttatgtaga |
10887569 |
T |
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| Q |
242 |
cgaggataaaagtatttgagccttggcaattttattaggcgcattgtggtcagttgaggaaactcttttatttctccttctgcaggtatttcatccttcg |
341 |
Q |
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| T |
10887568 |
cgaggataaaagtatttgagccttggcaagtttattaggtgcattgtggtcagttgaggaaactcttttatttctccttctgcaggtatttcatccttcg |
10887469 |
T |
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| Q |
342 |
aaaatatttctaccagctcctcacagtacgctgcactaagcacctcgagtctagta |
397 |
Q |
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| T |
10887468 |
aaaatatttctaccagctcctcacagttcgttgcactaagcaccttgagtctagta |
10887413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 121 - 356
Target Start/End: Complemental strand, 10855537 - 10855296
Alignment:
| Q |
121 |
taccttttcaattggaataagggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaatgatgtgcatacagctcttttagtgca |
220 |
Q |
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| T |
10855537 |
taccttttcaactggaacaagggcttgctcctctggatgatcttcttgacattcgagtatcactaagttacaccgatatgcatgcaattcttttagcatg |
10855438 |
T |
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| Q |
221 |
ggccattctagcttatgtagacgaggataaaagtatttgagccttggcaattttattaggcgcattgtggtcagttgagga------aactcttttattt |
314 |
Q |
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| T |
10855437 |
ggccattctagcttatgtaaaccacgataaaagtatttgagcgctggcaattttattatgtacaatgaggtcagagaaggaaacattaactcttttgttg |
10855338 |
T |
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| Q |
315 |
ctccttctgcaggtatttcatccttcgaaaatatttctacca |
356 |
Q |
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| T |
10855337 |
ctccttctgcaggtatttcatcctctgaaaatatttctacca |
10855296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10887832 - 10887786
Alignment:
| Q |
1 |
tgaataaaaataggaatagattccagtgatagatacatttataggtt |
47 |
Q |
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| T |
10887832 |
tgaataaaaataggaatagattccagtgatagatacatttataggtt |
10887786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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