View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_8 (Length: 399)
Name: NF16765_low_8
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 40585061 - 40584696
Alignment:
| Q |
18 |
tgctacttatgtatcaatatggagcaagatccgtgaaatgtgcagtttgcaattttgttacctcagttggggtcagtatagtttcctcttccttactatc |
117 |
Q |
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| T |
40585061 |
tgctacttatgtatcaatatggagcaagatccgtgaaatgtgcagtttgcaattttgttacctcagttggggtcagtatagtttcctcttccttactatc |
40584962 |
T |
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| Q |
118 |
ttttcctcttttctattttgaagagaaacaatgtaataaatcttaattccttgcaaaacaagacatagttttcgtagttaattatgtgctgtatgaaatt |
217 |
Q |
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| T |
40584961 |
ttttcctcttttctattttgaagagaaacaatgtaataaattttaattccttgcaaaacaagacatagttttcgtagttaattatgtgctgtatgaaatt |
40584862 |
T |
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| Q |
218 |
atttacactaatgttactgaatgatgatgacacaggcctcagcaagcacgacagagccgcagaagttcagcacctaataaatcatatactattatagcaa |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40584861 |
atttacactaatgttactgaatgatgatgacgcaggcctcagcaagcacgacagagccgcagaagttcagcacctaataaatcatatactattatagcaa |
40584762 |
T |
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| Q |
318 |
ggtcattacagactctacaaccttggtttttgctatttacatatcaatcttaaggaataataaaga |
383 |
Q |
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| T |
40584761 |
ggtcattacagactctacaaccttggtttttgctatttacatatcaatcttaaggaataataaaga |
40584696 |
T |
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