View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_low_9 (Length: 390)
Name: NF16765_low_9
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 158 - 373
Target Start/End: Complemental strand, 29008432 - 29008217
Alignment:
| Q |
158 |
gataatatgataattcattcataacaatcatgctttgtgtttagtttcattttccttctgtgtatatttcgtgattgaatttgaatcctatgcattatgc |
257 |
Q |
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| T |
29008432 |
gataatatgataattcattcataacaatcatgctttgtgtttagtttcattttccttctgtgtatatttcgtgattgaatttgaatcctatgcattatgc |
29008333 |
T |
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| Q |
258 |
aacactgagtatggtgtagtagctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcggaatcacaatgagttagcctga |
357 |
Q |
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| T |
29008332 |
gacactgagtatggtgtagtagctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcgaaatcacaatgagttagcctga |
29008233 |
T |
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| Q |
358 |
ttttgcaaatgctaca |
373 |
Q |
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| T |
29008232 |
ttttgcaaatgctaca |
29008217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 158 - 373
Target Start/End: Original strand, 21408768 - 21408981
Alignment:
| Q |
158 |
gataatatgataattcattcataacaatcatgctttgtgtttagtttcattttccttctgtgtatatttcgtgattgaatttgaatcctatgc---atta |
254 |
Q |
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| T |
21408768 |
gataatatgataattcattcataacaatcatgctttgtgtttatttccattttccctctgtctatatttcgtgattgaatttgaatcctatgcattatta |
21408867 |
T |
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| Q |
255 |
tgcaacactgagtatggtgtagtagctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcggaatcacaatgagttagcc |
354 |
Q |
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| T |
21408868 |
ttcaacactgagtatggtctggtaactctacaaacaacactattaactgcatgtttgtttggtgt----gtggctttgtcgaaatcacaacgagttaaca |
21408963 |
T |
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| Q |
355 |
tgattttgcaaatgctaca |
373 |
Q |
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| T |
21408964 |
tga-tttgcaaatgctaca |
21408981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 29008573 - 29008496
Alignment:
| Q |
17 |
attaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagag |
94 |
Q |
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| T |
29008573 |
attaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagag |
29008496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 21408633 - 21408710
Alignment:
| Q |
17 |
attaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagag |
94 |
Q |
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| T |
21408633 |
attaattaggttaaggtaatttaggtttgtttcctaattagttgaatttatctaaaactttattaactgatgatagag |
21408710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 21461209 - 21461298
Alignment:
| Q |
280 |
ctctacaaacagcactattaactgcatgtttgtttggtgtcgccgtggctttgtcggaatcacaatgagttagcctgattttgcaaatgctaca |
373 |
Q |
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| T |
21461209 |
ctctacaaacaacaatattaactgcatgtttgtttggtgt---cgtggctttgtcgaaatcacaacgagttaacatga-tttgcaaatgctaca |
21461298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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