View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16766_high_13 (Length: 285)
Name: NF16766_high_13
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 44903783 - 44903520
Alignment:
| Q |
1 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
100 |
Q |
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| T |
44903783 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
44903684 |
T |
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| Q |
101 |
tcaggtagtttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44903683 |
tcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtg |
44903584 |
T |
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| Q |
201 |
ttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgtaaaact |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903583 |
ttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgtaaaact |
44903520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 44917255 - 44916992
Alignment:
| Q |
1 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917255 |
aaaggttgtaggaaaagcacaaggattcataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcat |
44917156 |
T |
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| Q |
101 |
tcaggtagtttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44917155 |
tcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtg |
44917056 |
T |
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| Q |
201 |
ttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgtaaaact |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917055 |
ttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgtaaaact |
44916992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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