View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16766_high_2 (Length: 636)
Name: NF16766_high_2
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Complemental strand, 52035143 - 52034539
Alignment:
| Q |
14 |
catcagtaattatgcctttagcagtaggacatgtagcaagaggacaatgctcatcttgtccccaccaattcaaacttataccaccactactaaccgtaaa |
113 |
Q |
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| T |
52035143 |
catcagtaactatgcctttagcagtaggacatgtagcaagaggacaatgctcatcttgtccccaccaattcaaacttataccaccactactaaccgtaaa |
52035044 |
T |
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| Q |
114 |
gtatagaagagtagtcatgaaagccaatccagcatctaaagcagcagcaagaatataattgtatctctcccaccacttcttacgatatttgtggataaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52035043 |
gtatagaagagtagtcatgaaagccaatccagcatctaaagcagcagcaagaatataattgtatctctcccaccacttcttacgatatttgtggataaaa |
52034944 |
T |
|
| Q |
214 |
tagttaaatataactgcaacagtaatccatgaattgaaattcactgtgctagctggtggcatacttgcagttgcaccaagcagaacaggaatgtgaatgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034943 |
tagttaaatataactgcaacagtaatccatgaattgaaattcactgtgctagctggtggcatacttgcagttgcaccaagcagaacaggaatgtgaatgt |
52034844 |
T |
|
| Q |
314 |
atgatatccatttttgactgggaaaggcttttattagggcccatatgattattgggctcagtagtccaattaggaaggcccagttcagcttttcgtagtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034843 |
atgatatccatttttgactgggaaaggcttttattagggcccatatgattattgggctcagtagtccaattaggaaggcccagttcagcttttcgtagtt |
52034744 |
T |
|
| Q |
414 |
tcctagtggcccaaaaattcttcttggtcccaccaaaccccatataacggaggcatcaaagaacacgttgtcatttgggcatgtccatggactacctttg |
513 |
Q |
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| T |
52034743 |
tcctagtggcccaaaaattcttcttggtcccaccaaaccccatataacggaggcatcaaagaacacgttgtcatttgggcatgtccatggactacctttg |
52034644 |
T |
|
| Q |
514 |
ggaagttgatcttcatggcatatgttctttattgaacctagcaaccaccatgccacaccaacatccactgttccagctataagagtacctaaaatctgtg |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034643 |
ggaagttgatcttcatggcatatgttctttattgaacctagcaaccaccatgccacaccaacatccactgttccagctataagagtacctaaaatctgtg |
52034544 |
T |
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| Q |
614 |
gcatc |
618 |
Q |
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| T |
52034543 |
gcatc |
52034539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 574
Target Start/End: Complemental strand, 36902971 - 36902890
Alignment:
| Q |
493 |
catgtccatggactacctttgggaagttgatcttcatggcatatgttctttattgaacctagcaaccaccatgccacaccaa |
574 |
Q |
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|||||||||||||| ||||||||||| |||||| || |||||||| || | ||| |||||||||||||||| ||||||| |
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| T |
36902971 |
catgtccatggactgcctttgggaagaagatctttattacatatgtttttgactgagtctagcaaccaccatgctacaccaa |
36902890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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