View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16766_high_20 (Length: 209)

Name: NF16766_high_20
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16766_high_20
NF16766_high_20
[»] chr4 (22 HSPs)
chr4 (1-209)||(11701632-11701840)
chr4 (139-209)||(11797814-11797884)
chr4 (142-208)||(11675880-11675946)
chr4 (142-208)||(11684159-11684225)
chr4 (150-209)||(11695984-11696043)
chr4 (59-108)||(29517841-29517890)
chr4 (61-105)||(39263632-39263676)
chr4 (54-105)||(572173-572224)
chr4 (59-117)||(54110490-54110549)
chr4 (59-105)||(865421-865467)
chr4 (59-105)||(866279-866325)
chr4 (59-105)||(29145244-29145290)
chr4 (59-105)||(42712141-42712187)
chr4 (59-93)||(6711121-6711155)
chr4 (59-105)||(9170695-9170741)
chr4 (59-105)||(29144856-29144902)
chr4 (63-105)||(48615231-48615273)
chr4 (63-105)||(54109504-54109546)
chr4 (60-105)||(6056415-6056460)
chr4 (60-105)||(48614230-48614275)
chr4 (61-105)||(24573734-24573778)
chr4 (59-95)||(53535606-53535642)
[»] scaffold0294 (1 HSPs)
scaffold0294 (137-203)||(16413-16479)
[»] chr8 (13 HSPs)
chr8 (59-105)||(7601716-7601762)
chr8 (59-105)||(40784812-40784858)
chr8 (59-105)||(42093432-42093478)
chr8 (59-105)||(11596580-11596626)
chr8 (54-105)||(41723214-41723265)
chr8 (63-105)||(14446061-14446103)
chr8 (59-105)||(30427086-30427132)
chr8 (61-104)||(40575870-40575913)
chr8 (59-105)||(15224757-15224803)
chr8 (61-95)||(35627058-35627092)
chr8 (59-105)||(37727107-37727153)
chr8 (59-93)||(39529570-39529604)
chr8 (64-105)||(30136730-30136771)
[»] chr5 (13 HSPs)
chr5 (59-105)||(16899915-16899961)
chr5 (59-105)||(6895207-6895253)
chr5 (59-105)||(40366265-40366311)
chr5 (54-105)||(31559038-31559089)
chr5 (59-105)||(3099096-3099142)
chr5 (59-105)||(39084321-39084367)
chr5 (60-105)||(3098310-3098355)
chr5 (60-105)||(32694780-32694825)
chr5 (57-105)||(31558244-31558292)
chr5 (59-105)||(6894356-6894402)
chr5 (59-105)||(19432550-19432596)
chr5 (64-121)||(29096816-29096874)
chr5 (59-105)||(38914283-38914329)
[»] chr3 (16 HSPs)
chr3 (59-105)||(54280858-54280904)
chr3 (59-105)||(21103611-21103657)
chr3 (61-105)||(42121747-42121791)
chr3 (54-105)||(31090679-31090730)
chr3 (61-118)||(43631220-43631278)
chr3 (59-105)||(43656221-43656267)
chr3 (59-105)||(54295103-54295149)
chr3 (59-118)||(44707557-44707616)
chr3 (59-105)||(41780402-41780448)
chr3 (59-105)||(42489287-42489333)
chr3 (59-105)||(51218110-51218156)
chr3 (57-110)||(34985099-34985152)
chr3 (60-105)||(42488457-42488502)
chr3 (59-95)||(15951522-15951558)
chr3 (61-105)||(43655345-43655389)
chr3 (65-105)||(53427978-53428018)
[»] chr1 (13 HSPs)
chr1 (59-105)||(39841274-39841320)
chr1 (60-105)||(43380545-43380590)
chr1 (59-105)||(51465757-51465803)
chr1 (60-105)||(29373965-29374010)
chr1 (61-105)||(41147287-41147331)
chr1 (59-105)||(171447-171493)
chr1 (59-105)||(1743212-1743258)
chr1 (59-105)||(16878751-16878797)
chr1 (59-105)||(46728723-46728769)
chr1 (59-104)||(39025382-39025427)
chr1 (61-105)||(1744028-1744072)
chr1 (59-95)||(23551686-23551722)
chr1 (61-105)||(30856906-30856950)
[»] chr6 (4 HSPs)
chr6 (59-104)||(3184691-3184736)
chr6 (59-105)||(544345-544391)
chr6 (63-105)||(1175114-1175156)
chr6 (59-93)||(32403993-32404027)
[»] chr2 (17 HSPs)
chr2 (60-105)||(44075841-44075886)
chr2 (54-105)||(39233933-39233984)
chr2 (59-105)||(2215046-2215092)
chr2 (59-105)||(3834932-3834978)
chr2 (59-105)||(18234196-18234242)
chr2 (59-108)||(2076415-2076464)
chr2 (54-105)||(2075679-2075730)
chr2 (59-105)||(5429804-5429850)
chr2 (59-108)||(25455792-25455841)
chr2 (63-105)||(914385-914427)
chr2 (59-105)||(5429055-5429101)
chr2 (59-105)||(8873691-8873737)
chr2 (59-105)||(16011371-16011417)
chr2 (59-105)||(28784824-28784870)
chr2 (63-105)||(35907371-35907413)
chr2 (57-105)||(28783812-28783860)
chr2 (61-105)||(39475410-39475454)
[»] chr7 (13 HSPs)
chr7 (59-105)||(37796603-37796649)
chr7 (59-105)||(41345438-41345484)
chr7 (59-105)||(14419395-14419441)
chr7 (59-105)||(21985585-21985631)
chr7 (63-105)||(26828771-26828813)
chr7 (59-105)||(47723485-47723531)
chr7 (65-105)||(26829629-26829669)
chr7 (59-105)||(6822610-6822656)
chr7 (60-105)||(46196746-46196791)
chr7 (59-95)||(7945349-7945385)
chr7 (59-95)||(11337718-11337754)
chr7 (59-95)||(21984874-21984910)
chr7 (61-105)||(40193866-40193910)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11701632 - 11701840
Alignment:
Q  1 tttcatatctcaattaatctggtttacagtgatgtattttaaagnnnnnnnnctatatggacgaaaatcaaaactggtccaaattacagggacgattatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||     
T  11701632 tttcatatctcaattaatctggtttacagtgatgtattttaaagttttttttctacatggacgaaaatcaaaactggtccaaattacagggacgattata 11701731  T
Q  101 atattaaaccttctttatattttcttttttaaatggtgatgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11701732 atattaaaccttctttatattttcttttttaaatggtgatgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatca 11701831  T
Q  201 tattatgga 209  Q
    |||||||||    
T  11701832 tattatgga 11701840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 11797814 - 11797884
Alignment:
Q  139 atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatgga 209  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11797814 atgagaattgaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatgga 11797884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 11675880 - 11675946
Alignment:
Q  142 agaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatgg 208  Q
    |||||| |||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11675880 agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgg 11675946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 11684159 - 11684225
Alignment:
Q  142 agaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatgg 208  Q
    |||||| |||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11684159 agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgg 11684225  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 11695984 - 11696043
Alignment:
Q  150 aatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatgga 209  Q
    |||| ||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||    
T  11695984 aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatgga 11696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 29517841 - 29517890
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatattaaa 108  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  29517841 ggacgaaaatcaaaattgaaccaaattacagggacgattatcatattaaa 29517890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 39263676 - 39263632
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  39263676 acgaaaatcaaaactggtccaaattacagggacgaaaatcatatt 39263632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 572173 - 572224
Alignment:
Q  54 tatatggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||||||||||    
T  572173 tatagggacgaaaatcaaaactggaccaaattatagggacaattatcatatt 572224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 54110490 - 54110549
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcata-ttaaaccttcttta 117  Q
    ||||||||||||||||||   |||||||||||||||||||||||| ||||||||| ||||    
T  54110490 ggacgaaaatcaaaactgaaacaaattacagggacgattatcatatttaaacctttttta 54110549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 865467 - 865421
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||    
T  865467 ggacgaaaatcaaaactgacccaaattacagggatgattatcatatt 865421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 866279 - 866325
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||    
T  866279 ggacgaaaatcaaaactagactaaattacagggacgattatcatatt 866325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 29145244 - 29145290
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||    
T  29145244 ggacgaaaatcaaaatttgaccaaattacagggacgattatcatatt 29145290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 42712141 - 42712187
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||    
T  42712141 ggacaaaaatcaaaactggtccaaattacaaggacgactatcatatt 42712187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 6711121 - 6711155
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggac 93  Q
    |||||||| ||||||||||||||||||||||||||    
T  6711121 ggacgaaattcaaaactggtccaaattacagggac 6711155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 9170695 - 9170741
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| ||||| |||| | ||||||||||||||    
T  9170695 ggacgaaaatcaaaactggaccaaaatacaagaacgattatcatatt 9170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 29144856 - 29144902
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||| | |  ||||||||||||||||||||||||||    
T  29144856 ggacgaaaatcaaaatttgatcaaattacagggacgattatcatatt 29144902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 48615231 - 48615273
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||| |||||||||||| |||||| |||||||||    
T  48615231 gaaaatcaaaactcgtccaaattacatggacgaatatcatatt 48615273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 54109546 - 54109504
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||   |||||||||||||||||||||||||    
T  54109546 gaaaatcaaaactggagtaaattacagggacgattatcatatt 54109504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 6056460 - 6056415
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||  | |||||| ||||||||||||||||||    
T  6056460 gacgaaaatcaaaactgccctaaattatagggacgattatcatatt 6056415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 48614275 - 48614230
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||| |||||||| |||| ||||| ||||||||||||||||    
T  48614275 gacgaaaattaaaactggaccaatttacacggacgattatcatatt 48614230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 24573778 - 24573734
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| ||||||||||| |||  ||||||||||    
T  24573778 acgaaaatcaaaactggaccaaattacagagacagttatcatatt 24573734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 53535606 - 53535642
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacga 95  Q
    |||||||||||||||| || |||||||||||||||||    
T  53535606 ggacgaaaatcaaaacgggcccaaattacagggacga 53535642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 16413 - 16479
Alignment:
Q  137 tgatgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatat 203  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  16413 tgatgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatat 16479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 7601716 - 7601762
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  7601716 ggacgaaaatcaaaactggcccaaattacagggacgattatcatatt 7601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 40784858 - 40784812
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  40784858 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatt 40784812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 42093478 - 42093432
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  42093478 ggacgaaaatcaaaactggttcaaattacagggacgattatcatatt 42093432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11596580 - 11596626
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  11596580 ggacgaaaatcaaaactggtccaaattactgggacgattctcatatt 11596626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 41723265 - 41723214
Alignment:
Q  54 tatatggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| ||||| ||||||||||| | |||||||||||||||||||||||||||    
T  41723265 tatagggacggaaatcaaaacttgaccaaattacagggacgattatcatatt 41723214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 14446061 - 14446103
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  14446061 gaaaatcaaaattggcccaaattacagggacgattatcatatt 14446103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 30427132 - 30427086
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||| |||||||  |||||||||||||||||||||||||||    
T  30427132 ggacgaaaataaaaactgaaccaaattacagggacgattatcatatt 30427086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 40575870 - 40575913
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatat 104  Q
    |||||||||| ||||||||||||||| || ||||||||||||||    
T  40575870 acgaaaatcataactggtccaaattatagagacgattatcatat 40575913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 15224803 - 15224757
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||| || |||||||||||||||||  ||||||||    
T  15224803 ggacgaaaatcaaaacgggcccaaattacagggacgaaaatcatatt 15224757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 35627058 - 35627092
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacga 95  Q
    |||||||||||||||| ||||||||||||||||||    
T  35627058 acgaaaatcaaaactgatccaaattacagggacga 35627092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 37727153 - 37727107
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||||| |||||||| ||||||  ||||||||    
T  37727153 ggacgaaaatcaaaactggtctaaattacatggacgaaaatcatatt 37727107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 39529570 - 39529604
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggac 93  Q
    |||||||||||||||||| ||||||||||||||||    
T  39529570 ggacgaaaatcaaaactgatccaaattacagggac 39529604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 30136730 - 30136771
Alignment:
Q  64 aaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||| |||| ||||||||| ||||||||||||||||    
T  30136730 aaaatcaaaattggttcaaattacatggacgattatcatatt 30136771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 16899961 - 16899915
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  16899961 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatt 16899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 6895207 - 6895253
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  6895207 ggacgaaaatcaaaactggaccaaattacaaggacgattatcatatt 6895253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 40366311 - 40366265
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||    
T  40366311 ggacgaaaatcaaaactgacccaaattacagggacgattatcatatt 40366265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 31559038 - 31559089
Alignment:
Q  54 tatatggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| ||||||||||||||||||| | ||||||||| |||||||||||||||    
T  31559038 tatagggacgaaaatcaaaactggccaaaattacagtgacgattatcatatt 31559089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 3099096 - 3099142
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||||    
T  3099096 ggacgaaaattaaaactggaccaaattacatggacgattatcatatt 3099142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 39084321 - 39084367
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  39084321 ggacgaaaatcaaaattggcccaaattagagggacgattatcatatt 39084367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 3098355 - 3098310
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||  | |||||||||||||||||||||||||    
T  3098355 gacgaaaatcaaaactgacctaaattacagggacgattatcatatt 3098310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 32694780 - 32694825
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||||    
T  32694780 gacgaaaatcaaaactggcccaaactacaggggcgattatcatatt 32694825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 31558292 - 31558244
Alignment:
Q  57 atggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||||   |||||||||| |||||||||||||||    
T  31558292 atggacgaaaatcaaaactgactcaaattacagtgacgattatcatatt 31558244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 6894402 - 6894356
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| | |||||| ||||| ||||||||||||    
T  6894402 ggacgaaaatcaaaactggcctaaattagagggatgattatcatatt 6894356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 19432550 - 19432596
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||    
T  19432550 ggacaaaaatcaaaactgaaccaaattacaggaacgattatcatatt 19432596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 29096874 - 29096816
Alignment:
Q  64 aaaatcaaaactggtccaaattacagggacgattatcata-ttaaaccttctttatatt 121  Q
    |||||||||||||| |||||||||| |||||||| ||||| |||||||||  |||||||    
T  29096874 aaaatcaaaactggaccaaattacatggacgattttcatatttaaacctttcttatatt 29096816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 38914283 - 38914329
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  38914283 ggacgaaaatcaaaactggtctaaattatagggacgaaaatcatatt 38914329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 54280904 - 54280858
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  54280904 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatt 54280858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 21103611 - 21103657
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||    
T  21103611 ggacgaaaatcaaaactggtccaaattacagggacgaaaatcatatt 21103657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 42121747 - 42121791
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  42121747 acgaaaattaaaactggtccaaattatagggacgattatcatatt 42121791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 31090730 - 31090679
Alignment:
Q  54 tatatggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| |||||||||||||||| ||||||||||||||||||||  ||||||||    
T  31090730 tatagggacgaaaatcaaaacgggtccaaattacagggacgaaaatcatatt 31090679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 43631220 - 43631278
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcata-ttaaaccttctttat 118  Q
    ||||||||||||||||| |||||| ||| |||||||||||||| |||| ||||||||||    
T  43631220 acgaaaatcaaaactggaccaaatcacatggacgattatcatatttaagccttctttat 43631278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 43656221 - 43656267
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  43656221 ggacgaaaatcaaaactgtcccaaattacaaggacgattatcatatt 43656267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 54295103 - 54295149
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  54295103 ggacgaaaatcaaaactgacccaaattacatggacgattatcatatt 54295149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 44707557 - 44707616
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatattaaaccttctttat 118  Q
    |||||||||||||||  ||||||||||||||||||||  |||||||| || | |||||||    
T  44707557 ggacgaaaatcaaaatgggtccaaattacagggacgaaaatcatatttaagcctctttat 44707616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 41780402 - 41780448
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  41780402 ggacaaaaatcaaaacgggtccaaattacagggacgaaaatcatatt 41780448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 42489287 - 42489333
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  |||||||||| |||| |||||||||||    
T  42489287 ggacgaaaatcaaaactgacccaaattacaaggacaattatcatatt 42489333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 51218156 - 51218110
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||| ||||||||||| |||||||| |||||| |||||||||||    
T  51218156 ggacgaatatcaaaactggaccaaattatagggacaattatcatatt 51218110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 34985152 - 34985099
Alignment:
Q  57 atggacgaaaatcaaaactggtccaaattacagggacgattatcatattaaacc 110  Q
    ||||||||||||||||| ||| ||||||||||  ||||||||| ||||| ||||    
T  34985152 atggacgaaaatcaaaattggaccaaattacacagacgattattatatttaacc 34985099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 42488502 - 42488457
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||   ||||||||||||| ||||||||||||    
T  42488502 gacgaaaatcaaaactgactcaaattacagggatgattatcatatt 42488457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 15951522 - 15951558
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacga 95  Q
    |||||||||||||||| || |||||||||||||||||    
T  15951522 ggacgaaaatcaaaacgggcccaaattacagggacga 15951558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 43655389 - 43655345
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| |||||||| | ||| ||||||||||||    
T  43655389 acgaaaatcaaaactggcccaaattaaatggatgattatcatatt 43655345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 53427978 - 53428018
Alignment:
Q  65 aaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  53427978 aaatcaaaactggaccaaattacagaaacgattatcatatt 53428018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 39841274 - 39841320
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  39841274 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatt 39841320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 43380545 - 43380590
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43380545 gacgaaaatcaaaactgatccaaattacagggacgattatcatatt 43380590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 51465803 - 51465757
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  51465803 ggacgaaaatcaaaactgatccaaattacagggactattatcatatt 51465757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 29373965 - 29374010
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  29373965 gacgaaaatcaaaactgatccaaattacaaggacgattatcatatt 29374010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 41147287 - 41147331
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    
T  41147287 acgaaaatcaaaactggcccaaattacaaggacgattatcatatt 41147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 171447 - 171493
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||   |||||||||| |||||||||||||||    
T  171447 ggacgaaaatcaaaactgactcaaattacagagacgattatcatatt 171493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 1743258 - 1743212
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||||    
T  1743258 ggacgaaaatcaaaactgaactaaattatagggacgattatcatatt 1743212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 16878797 - 16878751
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||| ||| ||||||||||||||||  ||||||||    
T  16878797 ggacgaaaatcaaaacgggttcaaattacagggacgaaaatcatatt 16878751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 46728723 - 46728769
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  ||||| ||||| |||||||||||||||    
T  46728723 ggacgaaaatcaaaactgacccaaactacagtgacgattatcatatt 46728769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 39025427 - 39025382
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatat 104  Q
    ||||||||||||||| ||| ||||||||||||||  ||||||||||    
T  39025427 ggacgaaaatcaaaattggaccaaattacagggataattatcatat 39025382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 1744028 - 1744072
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||    
T  1744028 acgaaaatcaaaactggcccaaattacatagatgattatcatatt 1744072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 23551722 - 23551686
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacga 95  Q
    ||||||||||||||||  |||||||||||||||||||    
T  23551722 ggacgaaaatcaaaacgcgtccaaattacagggacga 23551686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 30856906 - 30856950
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||| | |||||||| ||||| ||||||||||||    
T  30856906 acgaaaatcaaaactagaccaaattatagggaagattatcatatt 30856950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 3184736 - 3184691
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatat 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  3184736 ggacgaaaatcaaaacttgtccaaattacagggacgattatcatat 3184691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 544391 - 544345
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  544391 ggacgaaaatcaaaactggaccaaattacagagacgattatcatatt 544345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 1175114 - 1175156
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||| ||||||||||||||||||||  ||||||||    
T  1175114 gaaaatcaaaacgggtccaaattacagggacgaaaatcatatt 1175156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 32404027 - 32403993
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggac 93  Q
    ||||||||||||||| |||||||||||||||||||    
T  32404027 ggacgaaaatcaaaagtggtccaaattacagggac 32403993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 44075886 - 44075841
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  44075886 gacgaaaatcaaaactggaccaaattacagggacgattatcatatt 44075841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 39233933 - 39233984
Alignment:
Q  54 tatatggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  39233933 tatatggacgaaaatcaaaattgaaccaaattacagggacgattatcatatt 39233984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 2215046 - 2215092
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  2215046 ggacgaaaatcaaaactggcccaaattacagggacgattattatatt 2215092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 3834978 - 3834932
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  3834978 ggacgaaaatcaaaactagaccaaattacagggacgattatcatatt 3834932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 18234242 - 18234196
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18234242 ggacgaaaatcaaaactggtccaaattacagagacgaatatcatatt 18234196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 2076415 - 2076464
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatattaaa 108  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  2076415 ggacgaaaatcaaaactggaccaaattatagggacaattatcatattaaa 2076464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 2075730 - 2075679
Alignment:
Q  54 tatatggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||| ||||||||||||||||||  | |||||||||||||||||||||||||    
T  2075730 tatagggacgaaaatcaaaactgacctaaattacagggacgattatcatatt 2075679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 5429804 - 5429850
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  5429804 ggacgaaaatcaaaattggaccaaattatagggacgattatcatatt 5429850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 25455841 - 25455792
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatattaaa 108  Q
    |||||||| ||| |||||| ||||||||| ||||||||||||||||||||    
T  25455841 ggacgaaattcataactggcccaaattacggggacgattatcatattaaa 25455792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 914427 - 914385
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||  | |||||||||||||||||||||||||    
T  914427 gaaaatcaaaactgacctaaattacagggacgattatcatatt 914385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 5429101 - 5429055
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  ||||||||||||||| ||| |||||||    
T  5429101 ggacgaaaatcaaaactgaaccaaattacagggacaattttcatatt 5429055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 8873737 - 8873691
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||| ||||| ||||||||||||||||||||  ||||||||    
T  8873737 ggacgaaaattaaaacgggtccaaattacagggacgaaaatcatatt 8873691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 16011417 - 16011371
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| | |||||||| | ||||||||||||||    
T  16011417 ggacgaaaatcaaaactggactaaattacaagaacgattatcatatt 16011371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 28784824 - 28784870
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||| | ||||||||||| ||||||||| |||||    
T  28784824 ggacgaaaatcaaaacttgaccaaattacagagacgattataatatt 28784870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 35907413 - 35907371
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||| | ||||||||||||||| |||||||||||    
T  35907413 gaaaatcaaaactagaccaaattacagggacaattatcatatt 35907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 28783860 - 28783812
Alignment:
Q  57 atggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||| |||| ||| | |||||||| ||||||||||||||||    
T  28783860 atggacgaaaattaaaattggactaaattacatggacgattatcatatt 28783812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 39475454 - 39475410
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||  |||||||||| ||||||||| |||||    
T  39475454 acgaaaatcaaaactggatcaaattacagagacgattattatatt 39475410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 37796649 - 37796603
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||    
T  37796649 ggacgaaaatcaaaactgacccaaattacagggacgattatcatatt 37796603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 41345438 - 41345484
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  41345438 ggacgaaaatcaaaactggaccaaattatagggacgattatcatatt 41345484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 14419441 - 14419395
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||    
T  14419441 ggacgaaaatcaaaactgccccaaaatacagggacgattatcatatt 14419395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 21985585 - 21985631
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||    
T  21985585 ggacgaaaatcaaaacgggtccaaattacagggacgaaaatcatatt 21985631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 26828813 - 26828771
Alignment:
Q  63 gaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  26828813 gaaaatcaaaactggaccaaattacagggacaattatcatatt 26828771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 47723485 - 47723531
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||    
T  47723485 ggacgaaaatcaaaactggtccaaattatagggacgaaaatcatatt 47723531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 26829629 - 26829669
Alignment:
Q  65 aaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  26829629 aaatcaaaactggactaaattacagggacgattatcatatt 26829669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 6822656 - 6822610
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||    
T  6822656 ggacgaaaaccaaaacttgaccaaattacagggacaattatcatatt 6822610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 46196746 - 46196791
Alignment:
Q  60 gacgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||| |||  ||| |||||||||||||||||||||||||||    
T  46196746 gacgaaaataaaatttggaccaaattacagggacgattatcatatt 46196791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 7945385 - 7945349
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacga 95  Q
    ||||||||||||||||  |||||||||||||||||||    
T  7945385 ggacgaaaatcaaaacgtgtccaaattacagggacga 7945349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 11337718 - 11337754
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacga 95  Q
    |||||||||||||||| || |||||||||||||||||    
T  11337718 ggacgaaaatcaaaacgggcccaaattacagggacga 11337754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 21984910 - 21984874
Alignment:
Q  59 ggacgaaaatcaaaactggtccaaattacagggacga 95  Q
    |||||||||||||||| || |||||||||||||||||    
T  21984910 ggacgaaaatcaaaacgggcccaaattacagggacga 21984874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 40193910 - 40193866
Alignment:
Q  61 acgaaaatcaaaactggtccaaattacagggacgattatcatatt 105  Q
    ||||||||||||| ||  ||||||||||| |||||||||||||||    
T  40193910 acgaaaatcaaaattgacccaaattacagcgacgattatcatatt 40193866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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