View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16766_high_4 (Length: 531)
Name: NF16766_high_4
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 247 - 515
Target Start/End: Complemental strand, 6644043 - 6643775
Alignment:
| Q |
247 |
actttctaggagttttctagagctatggatatggaaatggattccctacttcaaatgtgtgacccgattacaaaccttggcagtcatattaaattagtgg |
346 |
Q |
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| T |
6644043 |
actttctaggagttttctagagctatggatatggaaatggattccctacttcaaatgtgtgacccgattacaaaccttggcagtcatattaaattagtgg |
6643944 |
T |
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| Q |
347 |
ctaagatcctttaaaaataatttattaatggtatactttaacttgactcgttagattctgaaatcagcattggttaaggttcattattccatgaaacttc |
446 |
Q |
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| T |
6643943 |
ctaagatcctttaaaaataatttattaatggtatactttaacttgactcgttagattctgaaatcagcattggttaaggttcattattccgtgaaacttc |
6643844 |
T |
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| Q |
447 |
tattagagggaatccaagtcccacaatgtacatatttggatatacaactgttgcaccaaatatagataa |
515 |
Q |
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| T |
6643843 |
tattagagggaatccaagtcccacaatgtacatatttggatatacaactgttgcaccaaatatagataa |
6643775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 6644335 - 6644165
Alignment:
| Q |
14 |
attattctcctgtgaagacatgattattaaccaaagataatcatacttattttagttatttaggagcaaggatcatgaaattggccaagagg--atttct |
111 |
Q |
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| T |
6644335 |
attattctcctgtgaagacatgattattaaccaaagataatcatacttattttagttatttaggagcaaggatcatgaaattggccaagaggatatttct |
6644236 |
T |
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| Q |
112 |
ccaacgtggatgcatgtatatgattcccttttgtgctccactatatttattacaccaaaatgatgatatat |
182 |
Q |
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| T |
6644235 |
ccaacgtggatgcatgtatatgattcccttttgtgctccactatatttattacaccaaaatgatgatatat |
6644165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 6644132 - 6644065
Alignment:
| Q |
184 |
acgttaatttaaatggaccaacaacagaaaggtaagaatatatattgtggttgaactccaagaacttt |
251 |
Q |
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| T |
6644132 |
acgttaatttaaatggaccaacaacagaaaggtaagaatatatattgtggttgaactccaagaacttt |
6644065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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