View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16766_high_5 (Length: 490)

Name: NF16766_high_5
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16766_high_5
NF16766_high_5
[»] chr7 (2 HSPs)
chr7 (342-451)||(22648712-22648821)
chr7 (342-452)||(1066905-1067014)
[»] chr4 (2 HSPs)
chr4 (348-452)||(661620-661724)
chr4 (381-485)||(45031192-45031296)
[»] chr2 (3 HSPs)
chr2 (381-452)||(12836554-12836625)
chr2 (346-452)||(41148862-41148968)
chr2 (18-186)||(12836183-12836357)
[»] chr1 (4 HSPs)
chr1 (342-452)||(47794352-47794462)
chr1 (348-450)||(33812220-33812322)
chr1 (348-450)||(33871691-33871793)
chr1 (381-437)||(17961102-17961158)
[»] chr3 (3 HSPs)
chr3 (348-452)||(12040164-12040268)
chr3 (342-441)||(44867240-44867339)
chr3 (382-436)||(404327-404381)
[»] chr5 (1 HSPs)
chr5 (381-452)||(30053494-30053565)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 22648821 - 22648712
Alignment:
Q  342 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 441  Q
    |||| |||||||||||||||| ||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22648821 gaggagagagaaatttgttacgagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 22648722  T
Q  442 gctagtcttc 451  Q
     |||||||||    
T  22648721 actagtcttc 22648712  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 452
Target Start/End: Complemental strand, 1067014 - 1066905
Alignment:
Q  342 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 441  Q
    |||| |||||||||||||||| ||||||||||        | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1067014 gaggagagagaaatttgttacgagattttaacaaaaaaaaa-atgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 1066916  T
Q  442 gctagtcttcc 452  Q
     ||||||||||    
T  1066915 actagtcttcc 1066905  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 661724 - 661620
Alignment:
Q  348 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 447  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  661724 agagaaatttgttatgagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaagactagt 661625  T
Q  448 cttcc 452  Q
    |||||    
T  661624 cttcc 661620  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 381 - 485
Target Start/End: Original strand, 45031192 - 45031296
Alignment:
Q  381 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttccnnnnnnnagaggctattcattattcttc 480  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||       |||| |||||| |||||||||    
T  45031192 gatatgtttaaaacaaaataaaatttcaatcatatccttattttgttatatatacataaagactagtcttccttttttcagagcctattcgttattcttc 45031291  T
Q  481 tctct 485  Q
    |||||    
T  45031292 tctct 45031296  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 12836554 - 12836625
Alignment:
Q  381 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttcc 452  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12836554 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaaggctagtcttcc 12836625  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 452
Target Start/End: Complemental strand, 41148968 - 41148862
Alignment:
Q  346 ggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggcta 445  Q
    |||| |||||||||||| |||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  41148968 ggagggaaatttgttacgagattttaataaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaagacta 41148869  T
Q  446 gtcttcc 452  Q
     ||||||    
T  41148868 atcttcc 41148862  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 12836183 - 12836357
Alignment:
Q  18 atcttgatttccaaggttctgtattccatgatcgattgatccatcgtcnnnnnnnnnnnnntag------gggttgtgtgttgttgttctagggattagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||              ||      ||||| |||||||||| |||||| ||||||    
T  12836183 atcttgatttccaaggttctgtattccatgatcgattgatccatcgtcagagagagagagagagagattggggttatgtgttgttggtctagg-attagg 12836281  T
Q  112 gttttgatgactgtgttttgtggatttgttattatacac--gtattgttggaaggattaaataagggcccgtttgtt 186  Q
    ||||||||||||||||| |||||||| || |||||||||  ||||||||||||||||||||||| || |||||||||    
T  12836282 gttttgatgactgtgttatgtggatt-gtgattatacacacgtattgttggaaggattaaataatggtccgtttgtt 12836357  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 342 - 452
Target Start/End: Complemental strand, 47794462 - 47794352
Alignment:
Q  342 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 441  Q
    |||| |||||||||||||||| ||||||||||       |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47794462 gaggagagagaaatttgttacgagattttaacaaaaaaggatatgttcaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 47794363  T
Q  442 gctagtcttcc 452  Q
     ||| ||||||    
T  47794362 actaatcttcc 47794352  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 348 - 450
Target Start/End: Original strand, 33812220 - 33812322
Alignment:
Q  348 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 447  Q
    ||||||||||||||| ||||||||||        ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | |||||    
T  33812220 agagaaatttgttacgagattttaacataaaaatatatgtttataacaaactaaaattccaatcatatccttgttttgctatatatacataatgactagt 33812319  T
Q  448 ctt 450  Q
    |||    
T  33812320 ctt 33812322  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 348 - 450
Target Start/End: Original strand, 33871691 - 33871793
Alignment:
Q  348 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 447  Q
    ||||||||||||||| ||||||||||        ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | |||||    
T  33871691 agagaaatttgttacgagattttaacataaaaatatatgtttataacaaactaaaattccaatcatatccttgttttgctatatatacataatgactagt 33871790  T
Q  448 ctt 450  Q
    |||    
T  33871791 ctt 33871793  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 17961102 - 17961158
Alignment:
Q  381 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacac 437  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17961102 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacac 17961158  T

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Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 348 - 452
Target Start/End: Original strand, 12040164 - 12040268
Alignment:
Q  348 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 447  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||    
T  12040164 agagaaatttgttaggagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacataaagactagt 12040263  T
Q  448 cttcc 452  Q
    |||||    
T  12040264 cttcc 12040268  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 44867240 - 44867339
Alignment:
Q  342 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 441  Q
    |||| ||||||||||| |||||||||||||||        |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  44867240 gaggagagagaaatttattacaagattttaacaaaaaaatatatgtttaaaacaaattaaaattccaatcatatccttgttttgctatatatacacaaag 44867339  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 404327 - 404381
Alignment:
Q  382 atatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatataca 436  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  404327 atatgtttaaaacaaactaaaattccaatcatatccttgttttactatatataca 404381  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 30053494 - 30053565
Alignment:
Q  381 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttcc 452  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30053494 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacgcaaagactagtcttcc 30053565  T

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