View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16766_low_11 (Length: 366)

Name: NF16766_low_11
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16766_low_11
NF16766_low_11
[»] chr8 (3 HSPs)
chr8 (12-349)||(29271767-29272104)
chr8 (109-189)||(22023240-22023320)
chr8 (271-310)||(22023430-22023469)
[»] chr6 (43 HSPs)
chr6 (12-349)||(27716428-27716765)
chr6 (12-349)||(27696519-27696855)
chr6 (12-349)||(27680878-27681216)
chr6 (12-349)||(27609048-27609386)
chr6 (13-188)||(26804384-26804559)
chr6 (13-188)||(26648350-26648525)
chr6 (13-188)||(26754318-26754493)
chr6 (13-181)||(26625141-26625309)
chr6 (13-181)||(26731118-26731286)
chr6 (12-183)||(27675702-27675873)
chr6 (13-188)||(31286470-31286645)
chr6 (15-188)||(27704334-27704507)
chr6 (209-349)||(27590911-27591049)
chr6 (180-341)||(26648546-26648706)
chr6 (180-341)||(26754514-26754674)
chr6 (211-349)||(27675508-27675644)
chr6 (186-348)||(26625343-26625501)
chr6 (186-348)||(26731320-26731478)
chr6 (12-183)||(27591105-27591276)
chr6 (12-188)||(28794275-28794451)
chr6 (211-349)||(27704145-27704281)
chr6 (18-188)||(26657894-26658064)
chr6 (18-188)||(26763865-26764035)
chr6 (12-188)||(28788154-28788330)
chr6 (188-341)||(28794480-28794633)
chr6 (18-183)||(26885992-26886157)
chr6 (188-341)||(28788359-28788512)
chr6 (20-132)||(27663347-27663459)
chr6 (18-188)||(26863516-26863686)
chr6 (261-341)||(31286720-31286800)
chr6 (18-127)||(26813416-26813525)
chr6 (191-318)||(26804591-26804717)
chr6 (261-335)||(26863752-26863826)
chr6 (18-132)||(27216377-27216491)
chr6 (18-188)||(27602795-27602965)
chr6 (20-126)||(26850582-26850688)
chr6 (18-188)||(26825738-26825908)
chr6 (261-341)||(27529211-27529291)
chr6 (20-110)||(26960996-26961086)
chr6 (180-234)||(31286666-31286720)
chr6 (277-341)||(25547128-25547192)
chr6 (272-308)||(26825978-26826014)
chr6 (12-52)||(27425835-27425875)
[»] scaffold0349 (1 HSPs)
scaffold0349 (83-349)||(15251-15517)
[»] chr1 (5 HSPs)
chr1 (186-341)||(266267-266418)
chr1 (13-132)||(266501-266620)
chr1 (261-349)||(28125621-28125709)
chr1 (261-315)||(28130693-28130747)
chr1 (139-188)||(28125771-28125820)
[»] scaffold0277 (4 HSPs)
scaffold0277 (12-188)||(11773-11949)
scaffold0277 (12-188)||(2810-2986)
scaffold0277 (213-341)||(11590-11716)
scaffold0277 (234-341)||(2627-2735)
[»] chr2 (1 HSPs)
chr2 (18-188)||(17991301-17991471)
[»] scaffold0419 (2 HSPs)
scaffold0419 (12-188)||(9400-9576)
scaffold0419 (234-341)||(9651-9759)
[»] chr4 (13 HSPs)
chr4 (180-318)||(18653473-18653610)
chr4 (180-318)||(18677555-18677692)
chr4 (18-188)||(18677713-18677883)
chr4 (180-318)||(18729491-18729628)
chr4 (18-188)||(18697555-18697725)
chr4 (180-318)||(18722069-18722206)
chr4 (18-188)||(18653631-18653801)
chr4 (18-188)||(18729649-18729819)
chr4 (180-318)||(18687610-18687746)
chr4 (18-188)||(18722227-18722397)
chr4 (234-318)||(18697398-18697483)
chr4 (18-188)||(18687767-18687937)
chr4 (12-52)||(18075680-18075720)
[»] scaffold1870 (2 HSPs)
scaffold1870 (12-123)||(681-792)
scaffold1870 (234-341)||(932-1040)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-52)||(61488-61528)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 29272104 - 29271767
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272104 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 29272005  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29272004 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaca 29271905  T
Q  212 aaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29271904 aaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttcttgtgtttatgcagaagtttcaggatatgaaagtcttgat 29271805  T
Q  312 attggaccgatgtgaatacttaacacatatccccgatg 349  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29271804 attggaccgatgtgaatacttaacacatatccccgatg 29271767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 22023240 - 22023320
Alignment:
Q  109 tgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcac 189  Q
    |||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||| | |||||||||||||||||||||||    
T  22023240 tgagtgtattaaaatggaaaggatgtttatcggagtctctatcatctagtattttgagcaaggcaagtgaaataacttcac 22023320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 22023430 - 22023469
Alignment:
Q  271 cttgtgtttatgcagaagttccaggatatgaaagtcttga 310  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  22023430 cttgtgtttatgcagaagttccagaatatgaaagtcttga 22023469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 27716765 - 27716428
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||| ||||  |||||||||| || | ||||| |||||||    
T  27716765 aagaaaggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagtatcttccaagcagtttga 27716666  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27716665 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctaggattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaca 27716566  T
Q  212 aaagaaatcactatgaaagtatta-tagtctttgatttttagtttatttattgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttga 310  Q
    ||| |||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716565 aaa-aaatcagtatgaaagtaatattagtctttgatttttagtttatttattgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttga 27716467  T
Q  311 tattggaccgatgtgaatacttaacacatatccccgatg 349  Q
    |||||||||||||| |||| ||||||||||| |||||||    
T  27716466 tattggaccgatgtaaatatttaacacatatacccgatg 27716428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 27696855 - 27696519
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  27696855 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttga 27696756  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaga 211  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  || | |||||||||||||||| |    
T  27696755 gtgtattgaaatggaagggatgtttatcgaagtgtctgtcaactagtattttaaacaaggcaagtgaaataactt--cagttattttgtttccgtcaaca 27696658  T
Q  212 aaagaaatcactatgaaagtatta-tagtctttgatttttagtttatttattgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttga 310  Q
    |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  27696657 aaagaaatcagtatgaaagtaatattagtctttgatttttagtttatttattgtttctttcttgtgtttatgcagaagttccagaatatgaaaatcttga 27696558  T
Q  311 tattggaccgatgtgaatacttaacacatatccccgatg 349  Q
     |||||||   |||||||| ||||||||||| |||||||    
T  27696557 cattggacgattgtgaatatttaacacatatacccgatg 27696519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 27680878 - 27681216
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| || | ||||| ||||||     
T  27680878 aagaaaggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccttttttctggaggtctcaagtatcttccaagcagtttgc 27680977  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  27680978 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttcagtcaaca 27681077  T
Q  212 aaagaaatcactatgaaagtattatagtctttgatttttagtttattta-ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttga 310  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||| ||||||| |||||||||||| ||| |||||||||||||||    
T  27681078 aaagaaatcagtatgaaagtattattgtctttgatttttaatttattgatttgtttcttccttgtgtgtatgcagaagtttcagaatatgaaagtcttga 27681177  T
Q  311 tattggaccgatgtgaatacttaacacatatccccgatg 349  Q
     |||||||   |||||||| ||||||||||| |||||||    
T  27681178 cattggactattgtgaatatttaacacatatacccgatg 27681216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 27609386 - 27609048
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||| ||| || | ||||| ||||||     
T  27609386 aagaaaggaaaggccttcaagaagatgacaaaactgaaaacacttatcattgaaaatggccatttttctggaggtctgaagtatcttccaagcagtttgc 27609287  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  27609286 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctaatattttaaacaaggcaagtgaaataacttcacaatgattttgtttcagtcaaca 27609187  T
Q  212 aaagaaatcactatgaaagtattatagtctttgatttttagtttattta-ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttga 310  Q
    |||||||||| |||||||||||||| |||||||| ||||| |||||| | ||||||||| ||||||| |||||||||||| ||| |||||||||||||||    
T  27609186 aaagaaatcagtatgaaagtattattgtctttgagttttaatttattgatttgtttcttccttgtgtgtatgcagaagtttcagaatatgaaagtcttga 27609087  T
Q  311 tattggaccgatgtgaatacttaacacatatccccgatg 349  Q
     |||| ||   |||||||| ||||||||||| |||||||    
T  27609086 cattgaactattgtgaatatttaacacatatacccgatg 27609048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 26804384 - 26804559
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    ||||||||||||||||||| |||||||||||||| | |||| ||||| | |||||||| |||||||||| |||||||||| || | ||||| |||||||     
T  26804384 agaaaggaaaggccttcaaaaagatgacaaaactgagaacacttatcattgaaaatggacatttttctgaaggtctcaagtatcttccaagcagtttgat 26804483  T
Q  113 tgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
     ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  26804484 agtattgaaatggaaaggatgtttatcggagtctctatcatctagtattttaagcaaggcaagtgaaataacttca 26804559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 26648350 - 26648525
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||  |||||| ||  || | ||||| ||||||||    
T  26648350 agaaaggaaaggccttcaagaagatgacaaaactcaaaacacttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgag 26648449  T
Q  113 tgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
     ||||||||||||||||||||||||||  ||| ||| |||||||||||||||| |||||||||| | |||||||||    
T  26648450 agtattgaaatggaaaggatgtttatcagagtctctatcatctagtattttaagcaaggcaagttatataacttca 26648525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 26754318 - 26754493
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||  |||||| ||  || | ||||| ||||||||    
T  26754318 agaaaggaaaggccttcaagaagatgacaaaactcaaaacacttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgag 26754417  T
Q  113 tgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
     ||||||||||||||||||||||||||  ||| ||| |||||||||||||||| |||||||||| | |||||||||    
T  26754418 agtattgaaatggaaaggatgtttatcagagtctctatcatctagtattttaagcaaggcaagttatataacttca 26754493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 26625141 - 26625309
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||| | ||| |||| |  ||||||  |||||||||| || | ||||| ||||||||    
T  26625141 agaaaggaaaggccttcaggaagatgacaaaactcaaaacacttatcattgaagatggtcggttttctaaaggtctcaagtatcttccaagcagtttgag 26625240  T
Q  113 tgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaat 181  Q
     ||||||||||||||||||||||||||| ||| ||| ||| ||||| |||| |||||||||||||||||    
T  26625241 agtattgaaatggaaaggatgtttatcggagtctctatcagctagttttttgaacaaggcaagtgaaat 26625309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 26731118 - 26731286
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||| | ||| |||| |  ||||||  |||||||||| || | ||||| ||||||||    
T  26731118 agaaaggaaaggccttcaggaagatgacaaaactcaaaacacttatcattgaagatggtcggttttctaaaggtctcaagtatcttccaagcagtttgag 26731217  T
Q  113 tgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaat 181  Q
     ||||||||||||||||||||||||||| ||| ||| ||| ||||| |||| |||||||||||||||||    
T  26731218 agtattgaaatggaaaggatgtttatcggagtctctatcagctagttttttgaacaaggcaagtgaaat 26731286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 27675873 - 27675702
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    |||||||||||||||||||| |||||||||| | | |||||| ||||| | ||||||||||||| ||||  ||||||||||||| | ||||| |||||||    
T  27675873 aagaaaggaaaggccttcaaaaagatgacaagattgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagcatcttccaagcagtttga 27675774  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataa 183  Q
      | |||||||||| ||||||||||||| |||| ||| || ||||||||||||| |||||||||||||||||    
T  27675773 aagcattgaaatgggaaggatgtttatcaaagtctctctcgtctagtattttaagcaaggcaagtgaaataa 27675702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 31286470 - 31286645
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    ||||||||| |||||||||||||||||||||||| |||||| | ||| | |||||||||||||||||    || |||||| || | ||||  ||||||||    
T  31286470 agaaaggaatggccttcaagaagatgacaaaacttaaaacactaatcattgaaaatggccatttttccaatggactcaagtatcttccaaacagtttgag 31286569  T
Q  113 tgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
     ||||||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||||| ||||||||    
T  31286570 agtattgaaatggaaaggatgtttattggagtctctatcatctagtattttaagcaaggcaagtgaagtaacttca 31286645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 27704507 - 27704334
Alignment:
Q  15 aaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtg 114  Q
    ||||||| |||||||||||||||||||| | | |||||| ||||| | ||||||||||||| ||||  |||||||||| || | ||||| |||||||  |    
T  27704507 aaaggaatggccttcaagaagatgacaagattgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagtatcttccaagcagtttgaaag 27704408  T
Q  115 tattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
     |||||||||| ||||||||||||| |||| ||| || ||||||||||||| ||||||||||||||||||||||    
T  27704407 cattgaaatgggaaggatgtttatcaaagtctctatcgtctagtattttaagcaaggcaagtgaaataacttca 27704334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 209 - 349
Target Start/End: Complemental strand, 27591049 - 27590911
Alignment:
Q  209 agaaaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttctt-gtgtttatgcagaagttccaggatatgaaagtct 307  Q
    |||||||||||||||||||||||||   ||| |||| |||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||| | |||    
T  27591049 agaaaagaaatcactatgaaagtat---agtgtttgctttttaatttatttatagtttcttcctttgtgtttatgcagaagttccaggatatgacaatct 27590953  T
Q  308 tgatattggaccgatgtgaatacttaacacatatccccgatg 349  Q
    ||||||||||||  |||||||| ||||||||||| |||||||    
T  27590952 tgatattggaccattgtgaatatttaacacatatacccgatg 27590911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 341
Target Start/End: Original strand, 26648546 - 26648706
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaag-aaatcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgt 277  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||||||| |||||   ||| ||||||||||| |||||||||| |||| || |||||||    
T  26648546 ataaattcacaatgattttgtttccgtcaacaaaaacaaatcactatgagagtat---agtgtttgatttttaatttatttatttgtttgttccttgtgt 26648642  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    ||||||||||||||||| ||||||||||||||| |||| || | |||||||| ||||| |||||    
T  26648643 ttatgcagaagttccagaatatgaaagtcttgacattgaactgttgtgaatatttaactcatat 26648706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 341
Target Start/End: Original strand, 26754514 - 26754674
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaag-aaatcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgt 277  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||||||| |||||   ||| ||||||||||| |||||||||| |||| || |||||||    
T  26754514 ataaattcacaatgattttgtttccgtcaacaaaaacaaatcactatgagagtat---agtgtttgatttttaatttatttatttgtttgttccttgtgt 26754610  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    ||||||||||||||||| ||||||||||||||| |||| || | |||||||| ||||| |||||    
T  26754611 ttatgcagaagttccagaatatgaaagtcttgacattgaactgttgtgaatatttaactcatat 26754674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 349
Target Start/End: Complemental strand, 27675644 - 27675508
Alignment:
Q  211 aaaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttctt-gtgtttatgcagaagttccaggatatgaaagtcttg 309  Q
    |||||||||||||||||||||||   ||| |||| |||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||| | |||||    
T  27675644 aaaagaaatcactatgaaagtat---agtgtttgctttttaatttatttatagtttcttcctttgtgtttatgcagaagttccaggatatgacaatcttg 27675548  T
Q  310 atattggaccgatgtgaatacttaacacatatccccgatg 349  Q
    ||||||||||  |||||||| ||||||||||| |||||||    
T  27675547 atattggaccattgtgaatatttaacacatatacccgatg 27675508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 348
Target Start/End: Original strand, 26625343 - 26625501
Alignment:
Q  186 tcacaatgattttgtttccgtcaagaaaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttcttgtgtttatgcag 285  Q
    |||||||||||||||||  ||||| ||| ||| ||||||||| |||||   ||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  26625343 tcacaatgattttgtttatgtcaacaaa-gaagtcactatgagagtat---agtgtttgatttttaatttatttattgtttcttccttgtgtttatgcag 26625438  T
Q  286 aagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatatccccgat 348  Q
    ||||||||| |||||||||| || | |||||||  ||||||| | ||||||||||| ||||||    
T  26625439 aagttccagaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgat 26625501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 348
Target Start/End: Original strand, 26731320 - 26731478
Alignment:
Q  186 tcacaatgattttgtttccgtcaagaaaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttcttgtgtttatgcag 285  Q
    |||||||||||||||||  ||||| ||| ||| ||||||||| |||||   ||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  26731320 tcacaatgattttgtttatgtcaacaaa-gaagtcactatgagagtat---agtgtttgatttttaatttatttattgtttcttccttgtgtttatgcag 26731415  T
Q  286 aagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatatccccgat 348  Q
    ||||||||| |||||||||| || | |||||||  ||||||| | ||||||||||| ||||||    
T  26731416 aagttccagaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgat 26731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 27591276 - 27591105
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    |||||||||||||||||||| |||||||||| | | |||||| ||||  | ||||||||||||| ||||  |||||||||| || | | ||| |||||||    
T  27591276 aagaaaggaaaggccttcaaaaagatgacaagattgaaaacacttattattgaaaatggccattgttctaaaggtctcaagtatcttcgaagcagtttga 27591177  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataa 183  Q
      | |||||||||| ||||||||||||| |||| ||| || ||||||||||||| |||||||||||||||||    
T  27591176 aagcattgaaatgggaaggatgtttatcaaagtctctatcgtctagtattttaagcaaggcaagtgaaataa 27591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 28794275 - 28794451
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||| | | |||||  ||||| | ||||||||||||||||||  |||||||||  || | ||||| |||||||    
T  28794275 aagaaaggaaaggccttcaagaagatgacaagattgaaaacgcttatcattgaaaatggccatttttctaaaggtctcaactatcttccaagtagtttga 28794374  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    | ||||||||||     |||||||||||  ||| ||||| ||| |||| ||||| ||||||||||||||||||||||    
T  28794375 gagtattgaaattacgtggatgtttatcagagtctctgttatcaagtagtttaagcaaggcaagtgaaataacttca 28794451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 349
Target Start/End: Complemental strand, 27704281 - 27704145
Alignment:
Q  211 aaaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttctt-gtgtttatgcagaagttccaggatatgaaagtcttg 309  Q
    |||||||||||||||||||||||   ||| |||| |||||| ||||||||| ||||||| ||| ||||||||||||||||||| |||||||| |||||||    
T  27704281 aaaagaaatcactatgaaagtat---agtgtttgctttttaatttatttatagtttcttcctttgtgtttatgcagaagttcccggatatgacagtcttg 27704185  T
Q  310 atattggaccgatgtgaatacttaacacatatccccgatg 349  Q
    | ||||||||  ||| |||| ||||||||||| |||||||    
T  27704184 acattggaccattgtaaatatttaacacatatacccgatg 27704145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 26657894 - 26658064
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||| |||||| |||||||||||| ||||||||  ||||| | |||||||||| |||||||  |||||  || ||| | ||||| ||||||||  | |    
T  26657894 ggaaagcccttcaggaagatgacaaatctcaaaactcttatcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtagtttgagatttt 26657993  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||||||||||||||   ||||||| ||| |||||| |||||| |||||||||||||||||||| ||||    
T  26657994 tgaaatggaaaggatgtccttcgaagtctctatcatcttgtatttcaaacaaggcaagtgaaataagttca 26658064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 26763865 - 26764035
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||| |||||| |||||||||||| ||||||||  ||||| | |||||||||| |||||||  |||||  || ||| | ||||| ||||||||  | |    
T  26763865 ggaaagcccttcaggaagatgacaaatctcaaaactcttatcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtagtttgagatttt 26763964  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||||||||||||||   ||||||| ||| |||||| |||||| |||||||||||||||||||| ||||    
T  26763965 tgaaatggaaaggatgtccttcgaagtctctatcatcttgtatttcaaacaaggcaagtgaaataagttca 26764035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 28788154 - 28788330
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||| | | |||||  ||||| | ||||||||||||||||||  |||||||||  || | ||||| |||||||    
T  28788154 aagaaaggaaaggccttcaagaagatgacaagattgaaaacgcttatcattgaaaatggccatttttctaaaggtctcaactatcttccaagtagtttga 28788253  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    | ||||||||||     |||||||||||  ||| ||| | |||  ||| ||||| ||||||||||||||||||||||    
T  28788254 gagtattgaaattacgtggatgtttatcagagtctcttttatcatgtagtttaagcaaggcaagtgaaataacttca 28788330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 28794480 - 28794633
Alignment:
Q  188 acaatgattttgtttccgtcaagaaa--agaaatcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgca 284  Q
    ||||||||||||||| || ||| |||  |||||||||||||| |||||   ||| ||| ||||||| |||||||||| ||||||| ||||||||||||||    
T  28794480 acaatgattttgttttcgccaacaaagaagaaatcactatgatagtat---agtgtttaatttttaatttatttatttgtttcttccttgtgtttatgca 28794576  T
Q  285 gaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    |||||||||| | ||||||||||||| |||||||   |||||||| ||||| |||||    
T  28794577 gaagttccagaacatgaaagtcttgacattggacaagtgtgaatatttaacccatat 28794633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 26885992 - 26886157
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||| ||||||||||||||||||||||||||||  ||||| | |||||||||||||||||   |||||  ||| || | ||||  |||||||| ||||    
T  26885992 ggaaagtccttcaagaagatgacaaaactcaaaactcttatcattgaaaatggccatttttccaaaggtccgaagtatcttccaaatagtttgagagtat 26886091  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataa 183  Q
    | |||||||||||||||   ||  ||| ||| |||||||||||||| | |||||||||| ||||||    
T  26886092 ttaaatggaaaggatgtacttcagagtctctatcatctagtatttttagcaaggcaagtaaaataa 26886157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 28788359 - 28788512
Alignment:
Q  188 acaatgattttgtttccgtcaagaaa--agaaatcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgca 284  Q
    ||||||||||||||| || ||| |||  |||||||||||||| |||||   ||| ||| ||||||| |||||||||| ||||||| ||||||||||||||    
T  28788359 acaatgattttgttttcgccaacaaagaagaaatcactatgatagtat---agtgtttaatttttaatttatttatttgtttcttccttgtgtttatgca 28788455  T
Q  285 gaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    ||| |||||| | ||||||||||||| |||||||   |||||||| ||||| |||||    
T  28788456 gaatttccagaacatgaaagtcttgacattggacaagtgtgaatatttaacccatat 28788512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 27663459 - 27663347
Alignment:
Q  20 aaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattg 119  Q
    ||||||||| |||||||||| ||||||||||||| ||||| | ||||| ||| ||||||||  |||||||||| || | |||| ||||||||  ||||||    
T  27663459 aaaggcctttaagaagatgaaaaaactcaaaacacttatcattgaaaagggctatttttctaaaggtctcaagtatcttccaaaaagtttgatagtattg 27663360  T
Q  120 aaatggaaaggat 132  Q
    |||||||||||||    
T  27663359 aaatggaaaggat 27663347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 26863516 - 26863686
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||||||||||||||||| ||||||||||||| || || | ||||||||||||||||||  ||||| |||  |  |  ||||  ||||||| ||||    
T  26863516 ggaaaggccttcaagaagatgaaaaaactcaaaacacttgtcattgaaaatggccatttttctaaaggtcccaaatacctttcaagttgtttgagagtat 26863615  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    | ||||||||||||| |   || |||| ||| |||||| || |||| |||||||||||||| |||| ||||    
T  26863616 taaaatggaaaggatatccttccaagtctctatcatcttgttttttgaacaaggcaagtgatataatttca 26863686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 31286720 - 31286800
Alignment:
Q  261 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||   |||||||| |||||||||||    
T  31286720 ttgtttcttccttgtgtttacgcagaagttccagaatatgaaagtcttgacattggacgattgtgaatatttaacacatat 31286800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 26813416 - 26813525
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||||||||||||||||||||||||||||||| ||||  | |||||||| || ||||||  ||||| ||||||| | || || | |||||| ||||    
T  26813416 ggaaaggccttcaagaagatgacaaaactcaaaacacttattattgaaaatggtcaattttctaaaggtcccaagcatcttcctagtactttgagagtat 26813515  T
Q  118 tgaaatggaa 127  Q
    |||| |||||    
T  26813516 tgaagtggaa 26813525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 318
Target Start/End: Original strand, 26804591 - 26804717
Alignment:
Q  191 atgattttgtttccgtcaagaaaagaaat-cactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgcagaag 288  Q
    ||||||||||||| ||||| ||||  ||| |||||||| ||||||   || |||| |||| | |||||||||| ||||||| |||||||||||||||||     
T  26804591 atgattttgtttctgtcaacaaaaacaattcactatgagagtatt---gtgtttggttttgaatttatttatttgtttcttccttgtgtttatgcagaat 26804687  T
Q  289 ttccaggatatgaaagtcttgatattggac 318  Q
    |||||  ||||||||||||||| |||||||    
T  26804688 ttccaaaatatgaaagtcttgacattggac 26804717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 26863752 - 26863826
Alignment:
Q  261 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaac 335  Q
    |||||||||  |||||||||||||||||||| || |||||||||||||||||||||||   |||||||| |||||    
T  26863752 ttgtttcttctttgtgtttatgcagaagttcgagaatatgaaagtcttgatattggactattgtgaatatttaac 26863826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 27216377 - 27216491
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    ||||||||||||| |||||||| ||| ||||||||| ||||| | ||||||||||||||||||  ||||| |||  || | ||||| ||||||||  | |    
T  27216377 ggaaaggccttcacgaagatgaaaaatctcaaaacatttatcattgaaaatggccatttttctaaaggtcccaattatcttccaagtagtttgagatttt 27216476  T
Q  118 tgaaatggaaaggat 132  Q
     ||||||||||||||    
T  27216477 ggaaatggaaaggat 27216491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 27602965 - 27602795
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    ||||||||| | |||||||||||||| ||||||||| ||||| | |||||||| || |||||| ||||||   |  || | ||||| ||||||||  | |    
T  27602965 ggaaaggccatgaagaagatgacaaatctcaaaacacttatcattgaaaatggtcagttttctagaggtcctgactatcttccaagtagtttgagatttt 27602866  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
      |||||||| || |||   ||||||| ||| |||||| ||||||| ||||||||||||||||||| ||||    
T  27602865 gcaaatggaatggttgtccttcgaagtctctatcatcttgtattttgaacaaggcaagtgaaataaattca 27602795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 26850582 - 26850688
Alignment:
Q  20 aaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattg 119  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||| ||| | ||||||||  ||||| |||| || | || || |||||||| ||||||    
T  26850582 aaaggccttcaagaagatgacaaatctcaaaacacttatcgttgaagatgacaatttttctaaaggtcccaagtatcttccgagtagtttgagagtattg 26850681  T
Q  120 aaatgga 126  Q
     ||||||    
T  26850682 gaatgga 26850688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 26825738 - 26825908
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||| |||| |||||||||||| ||||||||| ||||  |  |||| ||||||||||||  |||||   || |  | ||||| |||||||| ||||    
T  26825738 ggaaaggctttcatgaagatgacaaatctcaaaacacttattattaaaaagggccatttttctaaaggtccagagtacctcccaagtagtttgagagtat 26825837  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||||| |  | | |   ||| | | ||| |||||||||||||| ||||||||||||||||||| ||||    
T  26825838 tgaaatgggataggtatccttcggattctctatcatctagtattttgaacaaggcaagtgaaataagttca 26825908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 27529291 - 27529211
Alignment:
Q  261 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    |||||||||  | |||||||||||||||||  | ||||||||||||||||||||| ||   |||||||| ||||| |||||    
T  27529291 ttgtttcttcttcgtgtttatgcagaagtttgaagatatgaaagtcttgatattgaacaattgtgaatatttaacccatat 27529211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 26960996 - 26961086
Alignment:
Q  20 aaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttg 110  Q
    |||||| ||||||||||||||||| ||||||||| ||||| | || || ||| ||||||||  ||||| |||| || | ||||| ||||||    
T  26960996 aaaggcattcaagaagatgacaaatctcaaaacacttatcattgagaaaggcaatttttctaaaggtcccaagtatcttccaagtagtttg 26961086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 31286666 - 31286720
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaagaaatcactatgaaagtatt 234  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||| || ||||||    
T  31286666 ataaattcacaataattttgttttcgtcaacaaaagaaatcactaagagagtatt 31286720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 25547128 - 25547192
Alignment:
Q  277 tttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    ||||||||| ||||| |  |||||||||||||||||||||| |  |||||||| ||||| |||||    
T  25547128 tttatgcaggagttcaactatatgaaagtcttgatattggatctttgtgaatatttaacccatat 25547192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 26825978 - 26826014
Alignment:
Q  272 ttgtgtttatgcagaagttccaggatatgaaagtctt 308  Q
    |||||||||||||||||||| || |||||||||||||    
T  26825978 ttgtgtttatgcagaagttcgagaatatgaaagtctt 26826014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 27425875 - 27425835
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaac 52  Q
    ||||| |||||||||||||||||||||||| | ||||||||    
T  27425875 aagaatggaaaggccttcaagaagatgacacacctcaaaac 27425835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 83 - 349
Target Start/End: Original strand, 15251 - 15517
Alignment:
Q  83 aggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaata 182  Q
    |||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15251 aggtctcaagtatcttccaagcagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctaggattttaaacaaggcaagtgaaata 15350  T
Q  183 acttcacaatgattttgtttccgtcaagaaaagaaatcactatgaaagtatta-tagtctttgatttttagtttatttattgtttctttcttgtgtttat 281  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  15351 acttcacaatgattttgtttccgtcaacaaaa-aaatcagtatgaaagtaatattagtctttgatttttagtttatttattgtttctttcttgtgtttat 15449  T
Q  282 gcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatatccccgatg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  15450 gcagaagttccaggatatgaaagtcttgatattggaccgatgtaaatatttaacacatatacccgatg 15517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 266418 - 266267
Alignment:
Q  186 tcacaatgattttgtttccgtcaagaaaagaaatcactatgaaagtattatagtctttgatttttagtttatttattgtttctttcttgtgtttatgcag 285  Q
    ||||||||||||||||| |||||| |||| |||||||||||| |||||   ||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  266418 tcacaatgattttgtttacgtcaacaaaaaaaatcactatgagagtat---agtctttgatttttagtttatttattgtttctc-cttgtgtgtatgcag 266323  T
Q  286 aagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatat 341  Q
    ||||||||||||||||| ||||||||||| ||||  |||||||| ||||| |||||    
T  266322 aagttccaggatatgaatgtcttgatattagaccattgtgaatatttaacccatat 266267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 266620 - 266501
Alignment:
Q  13 agaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgag 112  Q
    ||||||||||||||||||||||||||||||| ||||||||| || || | |||||||| |||||||||  |||||| ||| |  | | ||| |||||||     
T  266620 agaaaggaaaggccttcaagaagatgacaaatctcaaaacacttgtcattgaaaatgggcatttttctaaaggtctgaagtaccttcgaagcagtttgaa 266521  T
Q  113 tgtattgaaatggaaaggat 132  Q
     |||||||||||||||||||    
T  266520 agtattgaaatggaaaggat 266501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 28125709 - 28125621
Alignment:
Q  261 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatacttaacacatatccccgatg 349  Q
    |||||||||  |||||||||||||||||||| || |||||||||||||||  ||| ||   |||||||| ||||| ||||| |||||||    
T  28125709 ttgtttcttctttgtgtttatgcagaagttcgagaatatgaaagtcttgactttgaacttttgtgaatatttaacccatatacccgatg 28125621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 28130747 - 28130693
Alignment:
Q  261 ttgtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattg 315  Q
    |||||||||  |||||||||||||||||||| || ||| ||||||||||| ||||    
T  28130747 ttgtttcttctttgtgtttatgcagaagttcgagaatacgaaagtcttgacattg 28130693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 28125820 - 28125771
Alignment:
Q  139 cgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||| ||| ||||||||| |||| ||||||||||||||||||| ||||    
T  28125820 cgaagtctctatcatctagttttttgaacaaggcaagtgaaataagttca 28125771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 11949 - 11773
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||| ||| |||||  ||||| | ||||||||||||||||||  |||||||||| || | ||||| |||||||    
T  11949 aagaaaggaaaggccttcaagaagatgacaagactgaaaacgcttatcattgaaaatggccatttttctaaaggtctcaagtatcttccaagcagtttga 11850  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    | ||||||||||   | |||||||||||  ||| ||| | |||  ||| ||||| ||||||||||||||||||||||    
T  11849 gagtattgaaattacatggatgtttatcagagtctctattatcatgtagtttaagcaaggcaagtgaaataacttca 11773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 2986 - 2810
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||| ||| |||||  ||||| | ||||||| ||||||||||  |||||||||| || | ||||| |||||||    
T  2986 aagaaaggaaaggccttcaagaagatgacaagactgaaaacgcttatcattgaaaatgtccatttttctaaaggtctcaagtatcttccaagcagtttga 2887  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    | ||||||||||     |||||||||||  ||| ||| | |||  ||| ||||| ||||| ||||||||||||||||    
T  2886 gagtattgaaattacgtggatgtttatcagagtctctattatcatgtagtttaagcaaggtaagtgaaataacttca 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 11716 - 11590
Alignment:
Q  213 aagaaatcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgat 311  Q
    ||||||||||||||| |||||   ||| ||| ||||||| |||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||||||     
T  11716 aagaaatcactatgatagtat---agtgtttaatttttaatttatttatttgtttcttccttgtgtttatgcagaatttccagaacatgaaagtcttgac 11620  T
Q  312 attggaccgatgtgaatacttaacacatat 341  Q
    |||||||   |||||||| ||||| |||||    
T  11619 attggacaagtgtgaatatttaacccatat 11590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 2735 - 2627
Alignment:
Q  234 tatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatactt 332  Q
    |||||| ||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||| | |||||| |||||| ||||||| | |||||||| ||    
T  2735 tatagtgtttaatttttaattaatttatttgtttcttccttgtgtttatgcagaagttccagaacatgaaaatcttgacattggacaggtgtgaatattt 2636  T
Q  333 aacacatat 341  Q
    ||| |||||    
T  2635 aacccatat 2627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 17991471 - 17991301
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||||||||||||||||| ||||||||||||| ||||| | ||||||| ||||||||||| ||||| |||| || | ||||  |||||||| ||||    
T  17991471 ggaaaggccttcaagaagatgaaaaaactcaaaacacttatcattgaaaatgaccatttttctgaaggtcccaagtatcttccaaatagtttgagagtat 17991372  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||||||||||||||   || |||| ||| |||||| || |||  || |||||||||||||||| ||||    
T  17991371 tgaaatggaaaggatgtccttcaaagtctctatcatcttgtttttcgaataaggcaagtgaaataatttca 17991301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 9400 - 9576
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||| ||| |||||  ||||| | ||||||| ||||||||||  |||||||||| || | ||||| |||||||    
T  9400 aagaaaggaaaggccttcaagaagatgacaagactgaaaacgcttatcattgaaaatgtccatttttctaaaggtctcaagtatcttccaagcagtttga 9499  T
Q  112 gtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    | ||||||||||     |||||||||||  ||| ||| | |||  ||| ||||| ||||| ||||||||||||||||    
T  9500 gagtattgaaattacgtggatgtttatcagagtctctattatcatgtagtttaagcaaggtaagtgaaataacttca 9576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 9651 - 9759
Alignment:
Q  234 tatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatactt 332  Q
    |||||| ||| ||||||| |||||||||| ||||||| |||||||||||||||||||||||| | |||||| |||||| ||||||| | |||||||| ||    
T  9651 tatagtgtttaatttttaatttatttatttgtttcttccttgtgtttatgcagaagttccagaacatgaaaatcttgacattggacaggtgtgaatattt 9750  T
Q  333 aacacatat 341  Q
    ||| |||||    
T  9751 aacccatat 9759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 18653610 - 18653473
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaagaa-atcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgt 277  Q
    |||| ||||||||||||||||||| |||||||||| || |||||||||| |||||   ||| ||||||||||| ||||||| || |||||||  ||||||    
T  18653610 ataaattcacaatgattttgtttctgtcaagaaaataatatcactatgagagtat---agtgtttgatttttaatttatttgtttgtttcttctttgtgt 18653514  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggac 318  Q
    ||||||||| |||  |||||||||||||||||| |||||||    
T  18653513 ttatgcagaggtttgaggatatgaaagtcttgacattggac 18653473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 18677692 - 18677555
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaagaa-atcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgt 277  Q
    |||| ||||||||||||||||||| |||||||||| || |||||||||| |||||   ||| ||||||||||| ||||||| || |||||||  ||||||    
T  18677692 ataaattcacaatgattttgtttctgtcaagaaaataatatcactatgagagtat---agtgtttgatttttaatttatttgtttgtttcttctttgtgt 18677596  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggac 318  Q
    ||||||||| |||  |||||||||||||||||| |||||||    
T  18677595 ttatgcagaggtttgaggatatgaaagtcttgacattggac 18677555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18677883 - 18677713
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||| ||||||||||||||||||| ||||||||| ||||  | ||||||| |  |||||||  |||||||||| || | ||||| |||||||| ||||    
T  18677883 ggaaagaccttcaagaagatgacaaatctcaaaacacttattattgaaaatgtctctttttctaaaggtctcaagtatcttccaaggagtttgagagtat 18677784  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||||||| |||||||  ||  ||| ||| ||||||| |||||    ||||||||||||||||| ||||    
T  18677783 tgaaatggaatggatgttgttcagagtctctatcatctattatttgttgcaaggcaagtgaaataatttca 18677713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 18729628 - 18729491
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaagaa-atcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgt 277  Q
    |||| ||||||||||||||||||| |||||||||| || |||||||||| |||||   ||| ||| ||||||| ||||||| || |||||||  || |||    
T  18729628 ataaattcacaatgattttgtttctgtcaagaaaataatatcactatgagagtat---agtgttttatttttaatttatttgtttgtttcttctttttgt 18729532  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggac 318  Q
    ||||||||| |||  |||||||||||||||||| |||||||    
T  18729531 ttatgcagaggtttgaggatatgaaagtcttgacattggac 18729491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18697725 - 18697555
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||||||||||||||||||||| ||||||||| ||||  | ||||||| |  |||||||  || || |||| || | ||||| |||||||| ||||    
T  18697725 ggaaaggccttcaagaagatgacaaatctcaaaacacttattattgaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtat 18697626  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||| ||| |||||||   |  ||| ||| |||||| ||||||  | ||||||||||||||||| ||||    
T  18697625 tgaaattgaatggatgttctacagagtctctatcatcttgtatttgcagcaaggcaagtgaaataatttca 18697555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 18722206 - 18722069
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaagaa-atcactatgaaagtattatagtctttgatttttagtttatttatt-gtttctttcttgtgt 277  Q
    |||| ||||||||||||||||||  |||||||||| || |||||||||| |||||   ||| ||| ||||||| ||||||| || |||||||  ||||||    
T  18722206 ataaattcacaatgattttgtttatgtcaagaaaataatatcactatgagagtat---agtgttttatttttaatttatttgtttgtttcttctttgtgt 18722110  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggac 318  Q
    ||||||||| |||  || ||||||||||||||| |||||||    
T  18722109 ttatgcagaggtttgagcatatgaaagtcttgacattggac 18722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18653801 - 18653631
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||||||||||||||||||||| ||||||||| ||||  |  |||||| |  |||||||  || || |||| || | ||||| |||||||| ||||    
T  18653801 ggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtat 18653702  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||| ||| |||||||  ||  ||| ||| ||||||| |||||    ||||||||||||||||| ||||    
T  18653701 tgaaattgaatggatgttcttcagagtctctatcatctattatttgctgcaaggcaagtgaaataatttca 18653631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18729819 - 18729649
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||| ||||||||||||||||| ||||||||| ||||  |  |||||| | ||||||||  || || |||| || | ||||| |||||||| ||||    
T  18729819 ggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctatttttctaaagatcccaagtatcttccaagcagtttgagagtat 18729720  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||| ||| |||||||  ||  ||| ||| ||||||  ||||||   ||||||||||||||||| ||||    
T  18729719 tgaaattgaatggatgttcttcagagtctctatcatcttttattttctgcaaggcaagtgaaataatttca 18729649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 18687746 - 18687610
Alignment:
Q  180 ataacttcacaatgattttgtttccgtcaagaaaagaa-atcactatgaaagtattatagtctttgatttttagtttattt-attgtttctttcttgtgt 277  Q
    |||| ||||||||||||||| ||| |||||||||| || |||| || || ||   |||||| ||| ||||||| |||||||  |||||||||  ||||||    
T  18687746 ataaattcacaatgattttg-ttctgtcaagaaaataatatcattacgagag---tatagtgttttatttttaatttatttgtttgtttcttctttgtgt 18687651  T
Q  278 ttatgcagaagttccaggatatgaaagtcttgatattggac 318  Q
    ||||||||| |||  |||||||||||||||||| |||||||    
T  18687650 ttatgcagaggtttgaggatatgaaagtcttgacattggac 18687610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18722397 - 18722227
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||||||||||||||||||||| ||||||||| ||||  |  |||||| |  |||||||  || || |||| || | ||||| |||||||| ||||    
T  18722397 ggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtat 18722298  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||| |||  ||||||  ||   || ||| ||||||| |||||  | ||||||||||||||||| ||||    
T  18722297 tgaaattgaatcgatgttcctcagtgtctctatcatctattatttgcagcaaggcaagtgaaataatttca 18722227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 18697483 - 18697398
Alignment:
Q  234 tatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggac 318  Q
    |||||| ||||||||||| | ||||| || |||||||  ||||||||||||||| |||  |||||||||||||||||| |||||||    
T  18697483 tatagtatttgatttttaatatatttgtttgtttcttctttgtgtttatgcagaggtttgaggatatgaaagtcttgacattggac 18697398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18687937 - 18687767
Alignment:
Q  18 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 117  Q
    |||||||| ||||||||||||||||| ||||||||| ||||  |  |||||| |  |||| ||  || || |||| || | ||||| |||||||| ||||    
T  18687937 ggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctcttttactaaagatcccaagtatcttccaagcagtttgagagtat 18687838  T
Q  118 tgaaatggaaaggatgtttatcgaagtgtctgtcatctagtattttaaacaaggcaagtgaaataacttca 188  Q
    |||||| ||| |||||||   |  ||| ||| |||||| |||||   | ||||||||||||||||| ||||    
T  18687837 tgaaattgaatggatgttctacagagtctctatcatcttgtattggcagcaaggcaagtgaaataatttca 18687767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 18075680 - 18075720
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaac 52  Q
    ||||| |||||||||||||||||||||||| | ||||||||    
T  18075680 aagaatggaaaggccttcaagaagatgacacacctcaaaac 18075720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 681 - 792
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttga 111  Q
    ||||||||||||||||||||||||||||||| ||| |||||  ||||| | ||||||| ||||||||||  |||||||||| || | ||||| |||||||    
T  681 aagaaaggaaaggccttcaagaagatgacaagactgaaaacgcttatcattgaaaatgaccatttttctaaaggtctcaagtatcttccaagcagtttga 780  T
Q  112 gtgtattgaaat 123  Q
    | ||||||||||    
T  781 gagtattgaaat 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 932 - 1040
Alignment:
Q  234 tatagtctttgatttttagtttatttatt-gtttctttcttgtgtttatgcagaagttccaggatatgaaagtcttgatattggaccgatgtgaatactt 332  Q
    |||||| ||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||| | |||||| |||||| ||||||| | |||||||| ||    
T  932 tatagtgtttaatttttaattaatttatttgtttcttccttgtgtttatgcagaagttccagaacatgaaaatcttgacattggacaggtgtgaatattt 1031  T
Q  333 aacacatat 341  Q
    ||| |||||    
T  1032 aacccatat 1040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 61488 - 61528
Alignment:
Q  12 aagaaaggaaaggccttcaagaagatgacaaaactcaaaac 52  Q
    ||||| |||||||||||||||||||||||| | ||||||||    
T  61488 aagaatggaaaggccttcaagaagatgacacacctcaaaac 61528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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