View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16766_low_12 (Length: 339)
Name: NF16766_low_12
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 12769045 - 12768749
Alignment:
| Q |
13 |
aaaatgaagcgtgaataaa-gagttccgtacaaactattgtgttaaattaaaattggagaactggaattaggtgtcaaagtcaaaccattgatactcaat |
111 |
Q |
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| T |
12769045 |
aaaatgaagcgtgaataaaagagttccatacaaactattgtgttaaattaaaattggagaattggaattaggtgtcaaagtcaaaccattgatactcaat |
12768946 |
T |
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| Q |
112 |
ggcattatcatagcttggcttttctcccttccttcaattgatttgtctgttgacatcannnnnnncttcttc-gtgcgtatgtatatgccatagccacat |
210 |
Q |
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| T |
12768945 |
ggcattatcatagcttggcttttctcccttccttcaattgat-------ttgacatcattttttt-ttcttcagtgcgtatgtatatgccatagccacat |
12768854 |
T |
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| Q |
211 |
caccagatatgactattattagtaagtgattttattgtcatcagtacagatgtatccaaatacgaatattataatcagttggtttgcttaggtttttagg |
310 |
Q |
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| T |
12768853 |
caccagatatgactattattagtaagtgattttatt-------gtacagatgtatccaaatacgaatattataatcagttggtttgcttcggtttttagg |
12768761 |
T |
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