View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16766_low_17 (Length: 247)

Name: NF16766_low_17
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16766_low_17
NF16766_low_17
[»] chr7 (5 HSPs)
chr7 (119-229)||(37582186-37582296)
chr7 (1-53)||(37582111-37582163)
chr7 (145-231)||(37588511-37588596)
chr7 (172-231)||(37465575-37465634)
chr7 (181-231)||(6776576-6776626)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 37582186 - 37582296
Alignment:
Q  119 acaatagtgattcatcacttgcatattcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37582186 acaatagtgattcatcacttgcatattcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaag 37582285  T
Q  219 gcttttacctt 229  Q
    |||||||||||    
T  37582286 gcttttacctt 37582296  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37582111 - 37582163
Alignment:
Q  1 ccatgttcttgtaattggagaaaggtttttcaattttttatgcaactgcagtt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37582111 ccatgttcttgtaattggagaaaggtttttcaattttttatgcaactgcagtt 37582163  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 37588511 - 37588596
Alignment:
Q  145 tcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttg 231  Q
    |||||||||||| ||||||||||  |||| ||| |||||||||||||||| |  |||||||||| |||||||| |||||||||||||    
T  37588511 tcctttgttgtttcaccaaacactgcaaa-tcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacctttg 37588596  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 37465634 - 37465575
Alignment:
Q  172 aaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttg 231  Q
    |||||| ||||||||||||||||||  |||| ||||| |||||||| |||||||||||||    
T  37465634 aaatcgcaaacttcctacgcgttaatggctgcctgtaattgttcaaggcttttacctttg 37465575  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 6776576 - 6776626
Alignment:
Q  181 acttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttg 231  Q
    ||||||||||||||||  |||| ||||| |||||||| |||||||||||||    
T  6776576 acttcctacgcgttaatggctgcctgtaattgttcaaggcttttacctttg 6776626  T

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