View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16766_low_18 (Length: 239)

Name: NF16766_low_18
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16766_low_18
NF16766_low_18
[»] chr5 (5 HSPs)
chr5 (49-223)||(2210764-2210928)
chr5 (165-223)||(2198575-2198633)
chr5 (117-146)||(37455439-37455468)
chr5 (89-117)||(34384702-34384730)
chr5 (118-146)||(41330455-41330483)
[»] chr8 (2 HSPs)
chr8 (89-146)||(1961372-1961427)
chr8 (118-146)||(16983484-16983512)
[»] chr1 (2 HSPs)
chr1 (89-118)||(22540504-22540533)
chr1 (118-146)||(30678973-30679001)
[»] chr7 (3 HSPs)
chr7 (118-146)||(31502526-31502554)
chr7 (118-146)||(44350864-44350892)
chr7 (118-146)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (89-117)||(19447273-19447301)
chr4 (118-146)||(50164485-50164513)
[»] chr3 (1 HSPs)
chr3 (118-146)||(29388656-29388684)
[»] chr2 (1 HSPs)
chr2 (81-117)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 2210764 - 2210928
Alignment:
Q  49 ttctatgtacataattagtagattgagtaagactagctatactctcttttgaacactctctttaatactattgtg--agtctacactttgaaaattgaac 146  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||            ||||||||||||||||  |||||||||||||||||||||||    
T  2210764 ttctatgtacataattagtagattgagtaagactagctacactctct------------ctttaatactattgtgtgagtctacactttgaaaattgaac 2210851  T
Q  147 tagatcatattctgtttatttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210852 tagatcatattctgtttatttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 2210928  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 2198575 - 2198633
Alignment:
Q  165 tttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 223  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  2198575 tttaatttaatttaattttcgtttaatttttatgctaattttcaaatcagagctctctg 2198633  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 37455468 - 37455439
Alignment:
Q  117 tattgtgagtctacactttgaaaattgaac 146  Q
    ||||||||||||||||||||||||||||||    
T  37455468 tattgtgagtctacactttgaaaattgaac 37455439  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 34384702 - 34384730
Alignment:
Q  89 actctcttttgaacactctctttaatact 117  Q
    |||||||||||||||||||||||||||||    
T  34384702 actctcttttgaacactctctttaatact 34384730  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 41330455 - 41330483
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  41330455 attgtgagtctacactttgaaaattgaac 41330483  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 1961427 - 1961372
Alignment:
Q  89 actctcttttgaacactctctttaatactattgtgagtctacactttgaaaattgaac 146  Q
    ||||||||||||||||||||| ||||  ||||||  ||||||||||||||||||||||    
T  1961427 actctcttttgaacactctctctaat--tattgttggtctacactttgaaaattgaac 1961372  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 16983512 - 16983484
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  16983512 attgtgagtctacactttgaaaattgaac 16983484  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 22540533 - 22540504
Alignment:
Q  89 actctcttttgaacactctctttaatacta 118  Q
    ||||||||||||||||||||||||||||||    
T  22540533 actctcttttgaacactctctttaatacta 22540504  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 30678973 - 30679001
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  30678973 attgtgagtctacactttgaaaattgaac 30679001  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 31502526 - 31502554
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  31502526 attgtgagtctacactttgaaaattgaac 31502554  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 44350864 - 44350892
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  44350864 attgtgagtctacactttgaaaattgaac 44350892  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 46517409 - 46517381
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  46517409 attgtgagtctacactttgaaaattgaac 46517381  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 19447301 - 19447273
Alignment:
Q  89 actctcttttgaacactctctttaatact 117  Q
    |||||||||||||||||||||||||||||    
T  19447301 actctcttttgaacactctctttaatact 19447273  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 50164513 - 50164485
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  50164513 attgtgagtctacactttgaaaattgaac 50164485  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 29388656 - 29388684
Alignment:
Q  118 attgtgagtctacactttgaaaattgaac 146  Q
    |||||||||||||||||||||||||||||    
T  29388656 attgtgagtctacactttgaaaattgaac 29388684  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 38464340 - 38464304
Alignment:
Q  81 ctagctatactctcttttgaacactctctttaatact 117  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  38464340 ctagcaatactctcttttgaacactctctctaatact 38464304  T

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