View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16766_low_21 (Length: 209)
Name: NF16766_low_21
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 9424233 - 9424407
Alignment:
| Q |
16 |
atgaactacggctgcagctctagtattatgcgtccaaatttcggcagtaaccacgttacagcgaaggtctgcaagaaccgcacagatttcagatagtaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9424233 |
atgaactacggctgcagctctagtattatgcgtccaaatttcggcagtaaccacgttacagcgaaggtctgcaagaaccgcacagatttcagatagtaaa |
9424332 |
T |
|
| Q |
116 |
ccaggcctgtctgtgccagtgagttcaataacagtgtgctcttcggtacgtacaaccccaacagactctctcatt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
9424333 |
ccaggcctgtctgtgccagtgagttcaataacagtgtgctcttcggtaggtacaaccccaacagattctctcatt |
9424407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University