View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16766_low_8 (Length: 418)
Name: NF16766_low_8
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 17774912 - 17775325
Alignment:
| Q |
1 |
acagaagaaggtccacgtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatgaa |
100 |
Q |
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| T |
17774912 |
acagaagaaggaccacgtaccatcaactccttacaacgaataacatcaagcttaacgactctttcgagctccacattccaactcaaacatagtgaatgaa |
17775011 |
T |
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| Q |
101 |
atcacattgagtacatgaccatttctagccatacagtctcaattcaatcgtgaagcatcgaaacaaattaaagcacaaccacaaattattcaaaagaagt |
200 |
Q |
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| T |
17775012 |
atcacattgagtacataaccatttctagccatacagtctcaattcaatcatgaagcattgaaacaaattaaagcacaaccccaaattattcaaaagaagt |
17775111 |
T |
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| Q |
201 |
gtctgagtacaaattggatttgaaactggatctgtaacacgaaactggatccgatggatctcactcaaaagggtttgagagagctatggtgaacccaaaa |
300 |
Q |
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| T |
17775112 |
gttggagtacaaattggatttgaaactggatctgtaacacgaaaccggatccgatggatctcactcaaaagggtttgagagagctatggtgaacccaaaa |
17775211 |
T |
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| Q |
301 |
gaacaccgtttgtgctgttgacggcgaccttaattagaacaacaaaacagctgccactgccgaggaacccccaaaacatgaaccacaggcagtgacggtg |
400 |
Q |
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| T |
17775212 |
gaacaccatttgtgccgttgacggcgacc----ttagaacaacaaaacagctgccactgccgaggaacccccaaaacattaaccacaggcagtgacggtg |
17775307 |
T |
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| Q |
401 |
atctagaacactagatcg |
418 |
Q |
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| T |
17775308 |
atctagaacactagatcg |
17775325 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 25125491 - 25125551
Alignment:
| Q |
39 |
aatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
99 |
Q |
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| T |
25125491 |
aatagcaacaagcttaacgaccctttcgagccccacaatccaaaccaaacaaagtgaatga |
25125551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 2900649 - 2900730
Alignment:
| Q |
17 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
99 |
Q |
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| T |
2900649 |
gtaccatcaactccctacaac-aatggcagcaagctaaacgaccatttcgagcctcacagtccaaatcaaacgaagtgaatga |
2900730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 33440414 - 33440334
Alignment:
| Q |
17 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatg |
98 |
Q |
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| T |
33440414 |
gtaccttcaactccctacaac-aatagcagcaagttaaacgaccctttcgagccgcacaatccaaatcacacaaagtgaatg |
33440334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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