View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16766_low_9 (Length: 376)
Name: NF16766_low_9
Description: NF16766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16766_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 17775391 - 17775747
Alignment:
| Q |
2 |
ctaaaaaataagctatgacaaaccacatgtcaaacatatatcttaaattttttgacaggtgaaacttagaccgtgcaaagcctatttccactcatagtat |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||| || || |
|
|
| T |
17775391 |
ctaaaaaataagctatgacaaaccgcatgtcaaatatatgccttaaattttttgacaggtcaaacttagaccttgcaaaacctatttccactcgtaatac |
17775490 |
T |
|
| Q |
102 |
cgggcat----ccaaatctttataaaaataagatgaattaaaaagtgcattcatacaaatannnnnnna-gaactaaaatcaaaacttcttcacttcata |
196 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
17775491 |
cgggcatggagccaaatctttata-------gatgaattaaa--gtgcattcatacaaatatttttttaagaactaaaatcaaaacttattcacttcata |
17775581 |
T |
|
| Q |
197 |
cagaaaaatatatatttaattcttattttttatcaaataagtcaaaattcacgagtttattactgttctactcggtgaagaaaactcaaacaaaaaagtg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17775582 |
cagaaaaatatatatttaattcttattttttatcaaataagtcaaaattcacgagtttattactgttctactcggtgaagaaaactcaaacaaaaaagtg |
17775681 |
T |
|
| Q |
297 |
gcaaatacaatgtaacaccacattgaaaataagtttttacctaactctcatgtttgacacattgat |
362 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17775682 |
gcaaatacaatgtaacacctcattgaaaataagtttttacctaactctcatgtttgacacattgat |
17775747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University