View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16767_low_1 (Length: 948)
Name: NF16767_low_1
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 875; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 875; E-Value: 0
Query Start/End: Original strand, 18 - 936
Target Start/End: Original strand, 14247429 - 14248347
Alignment:
| Q |
18 |
caccagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247429 |
caccagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaa |
14247528 |
T |
|
| Q |
118 |
acacattgccactttagttctatccaacacccacctccaagacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagatt |
217 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247529 |
acacgttggcactttagttctatccaacacccacctccaagacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagatt |
14247628 |
T |
|
| Q |
218 |
aagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaagaccattccggtgccaaatagcagccttgttcaattgtgagtgtg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247629 |
aagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaagaccattccggtgccaaatagcagccttgttcaattgtgagtgtg |
14247728 |
T |
|
| Q |
318 |
gcgattctatcatcaatgttgtttgtgggaggtatgaacaccttatgggtgagtttacttaccaccttgaataggacaattatgatctttccttcctttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247729 |
gcgattctatcatcaatgttgtttgtgggaggtatgaacaccttatgggtgagtttacttaccaccttgaataggacaattatgatctttccttcctttt |
14247828 |
T |
|
| Q |
418 |
aaatttgtgaaattgtgtggttcttgttgcaattcgagtcactaatgtcatgtttgtttatgggtgtgatagtaagtcttgtgtctcatgtttgcacaac |
517 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
14247829 |
aaatttgtgaaactgtgtggttcttgttgcaattcgagtcactaatgtcatttttgtttatgggtttgatagtaaatcttgtgtctcatgtttgcacaac |
14247928 |
T |
|
| Q |
518 |
atgaattttctaaagcaccaaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctcaatgctgagatgagtcttgtggctgggta |
617 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14247929 |
atgaattttctaaagcaccaaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctcaatgctgagatgagtcttgtggctgggga |
14248028 |
T |
|
| Q |
618 |
ggtaggttcacgtcctgtactaagtgttgcaccccatttgctctgataggctccaaaatgacctttccaaggtcaacgcccttattgggatggagcaaga |
717 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248029 |
ggtaggttcacgtcctgtactaagtgttgcgccccatttgctctgataggctccaaaatgacctttccaaggtcaacgcccttattgggatggagcaaga |
14248128 |
T |
|
| Q |
718 |
tgaagtctaagataggaactcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcgtcccaaattctatgttattaagactactt |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248129 |
tgaagtctaagataggaactcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcgtcccaaattctatgttattaagactactt |
14248228 |
T |
|
| Q |
818 |
tctaagacgtccaattgtttgaattagctagctaggaaaattttgttcgattgtgacgatgagtgcacaaagccaataatattcaattcagtagaattta |
917 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14248229 |
tctaagacgtccaattgtttgaattagctagctaggaaaattttgttcgatggtgacgatgagtgcacaaagccaagaatattcaattcagtagaattta |
14248328 |
T |
|
| Q |
918 |
ctcaatgtcttttgatgat |
936 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
14248329 |
ctcaatgtcttttgttgat |
14248347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 9850591 - 9850723
Alignment:
| Q |
155 |
caagacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctg |
254 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||| ||||||| | |
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| T |
9850591 |
caagacagtaccttcacttcctccgccaattcctccaccctctttaccacattcataaagattaagctattcctagaattccaaataacccaaagtgccg |
9850690 |
T |
|
| Q |
255 |
cgtgccaaataagccaaagaccattccggtgcc |
287 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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| T |
9850691 |
tgtgccaaataagccaaagaccattccagtgcc |
9850723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 9850332 - 9850424
Alignment:
| Q |
21 |
cagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttatcgcataaggcattcttttgggttccaacaccattcataga |
113 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9850332 |
cagcaatagcgctatcaatattcactgaaactcgaggaaaaaactccacttatcgcataaggcattcttttgggttccaacaccattcataga |
9850424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 739
Target Start/End: Original strand, 14263349 - 14263398
Alignment:
| Q |
690 |
tcaacgcccttattgggatggagcaagatgaagtctaagataggaactca |
739 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||| |||||||||| |
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| T |
14263349 |
tcaacgacctaattgggatggagcaacatgaagtctaaactaggaactca |
14263398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 9e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 1330218 - 1330480
Alignment:
| Q |
18 |
caccagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| || |
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| T |
1330218 |
caccagcaacagcgctgtcaatatacacagaaactcgagaaaaaac-tccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataa |
1330316 |
T |
|
| Q |
118 |
acacattgccactttagttctatccaacacccacctccaagacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagatt |
217 |
Q |
| |
|
||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330317 |
acatgccgacactttagttctatccaacacccaactccaagac-----cttcacttcctccaccaattcatccaccctccttaccacattcttaaagatt |
1330411 |
T |
|
| Q |
218 |
aagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaagaccattccggtgc |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
1330412 |
aagctatttctagcattccaaataacccaaagtgccgcgtgccaaataagcaaaagaccattccggtgc |
1330480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 29083237 - 29083191
Alignment:
| Q |
71 |
tatcgcataaggcattcttttgggttccaacaccattcatagaacaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29083237 |
tatcgcaaaaggcattcttttgggttccaacaccattcataaaacaa |
29083191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 41029722 - 41029688
Alignment:
| Q |
86 |
tcttttgggttccaacaccattcatagaacaaaca |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
41029722 |
tcttttgggttccaacaccattcataaaacaaaca |
41029688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 48721891 - 48721853
Alignment:
| Q |
79 |
aaggcattcttttgggttccaacaccattcatagaacaa |
117 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
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|
| T |
48721891 |
aaggcattctttcggattccaacaccattcatagaacaa |
48721853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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