View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16767_low_10 (Length: 390)
Name: NF16767_low_10
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 51627917 - 51627534
Alignment:
| Q |
1 |
acttaaattttcatgtggatttgtactccatactaacacccccagaagtgaaaatctataaaatattgtcaatcatgaaaaatttgtatgttgagcacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51627917 |
acttaaattttcatgtggatttgtactccatactaacacccccagaagtgaaaatctataaaatattgtcaatcatgaaaaatgtgtatgttgagcacct |
51627818 |
T |
|
| Q |
101 |
ttcttaaacattgtcataaagcaagtatctcaaagcttaggtgaagacacatgaatgatgaatgactaacatctgtaacaaaacccatctaggtttttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51627817 |
ttcttaaacattgtcataaagcaagtatctcaaagcttaggtgaagacgcatgaatgatgaatgactaacatctgtaacaaaacccatctaggtttttag |
51627718 |
T |
|
| Q |
201 |
ctaatagatgatcttacacaaagaacttagcatacctttgaaatttcttcacaatgcttcacaacaactaatatatttgtataacgtccatgcactagca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51627717 |
ctaatagatgatcttacacaaagaacttagcatacctttgaaatttcttcacaatgcttcacaacaactgatatatttgtataacgtccatgcactagca |
51627618 |
T |
|
| Q |
301 |
cataggcccacaagagaagcttccttgggatgctcagatcaagggcttcaactccggtcatagttggatcgaacggtgtctctg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51627617 |
cataggcccacaagagaagcttccttgggatgctcagatcaagggcttcaactccggtcatagttggatcgaacggtgtctctg |
51627534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University