View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16767_low_11 (Length: 342)
Name: NF16767_low_11
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 331097 - 330809
Alignment:
| Q |
23 |
ataacagccatcatcgccaccaatgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgc |
122 |
Q |
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| T |
331097 |
ataacagccatcatcgccaccaatgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgc |
330998 |
T |
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| Q |
123 |
tttgtct-------gctttattcattttacatttctcaatcaatctcatgatttatttattatgaataggttatccaccatctgatgcaaaggaaggaca |
215 |
Q |
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| T |
330997 |
tttgtctaatgtccgcattattcattttacatttctcaatc----tcatgatttatttat---gaataggttatccaccatctgatgcaaaggaaggaca |
330905 |
T |
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| Q |
216 |
tcctccacaaggatatccacctcaagggtatccaccgcaaggttatccaccgcaagggtatccaccacaaggatatccgccaccgggatatccacc |
311 |
Q |
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| T |
330904 |
tcctccacaagggtatccaccacaagggtatccaccgcaagggtatccaccgcaaggatatccgccaccgggatatccaccaccaggttatccacc |
330809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 330852 - 330811
Alignment:
| Q |
283 |
caaggatatccgccaccgggatatccaccaccaggttatcca |
324 |
Q |
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| T |
330852 |
caaggatatccgccaccgggatatccaccaccaggttatcca |
330811 |
T |
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