View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16767_low_13 (Length: 327)

Name: NF16767_low_13
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16767_low_13
NF16767_low_13
[»] chr5 (9 HSPs)
chr5 (1-310)||(13378242-13378551)
chr5 (118-306)||(13372508-13372696)
chr5 (144-303)||(13425595-13425754)
chr5 (144-307)||(13453114-13453277)
chr5 (113-303)||(13446301-13446491)
chr5 (144-303)||(13418721-13418880)
chr5 (200-306)||(13386136-13386242)
chr5 (146-288)||(13389870-13390012)
chr5 (146-288)||(13394330-13394472)
[»] chr8 (1 HSPs)
chr8 (113-300)||(28431499-28431686)
[»] chr4 (1 HSPs)
chr4 (146-306)||(47600477-47600637)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 13378551 - 13378242
Alignment:
Q  1 ggagtttccagtattttctttgattgtgggtaagcatatgatnnnnnnnttctatacagactatgttatattaaaatatgaaggttgttaaatataatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13378551 ggagtttccagtattttctttgattgtgggtaagcatatgataaaaaaattctatacagactatgttatattaaaatatgaaggttgttatatataatac 13378452  T
Q  101 atcacattattttttgtagggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13378451 atcacattattttttgtagggagaaagacaattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcg 13378352  T
Q  201 taaaacctgatattgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13378351 taaaacctgatattgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattgg 13378252  T
Q  301 aaacacaatg 310  Q
    ||||||||||    
T  13378251 aaacacaatg 13378242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 118 - 306
Target Start/End: Complemental strand, 13372696 - 13372508
Alignment:
Q  118 agggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgag 217  Q
    |||||||||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||||    
T  13372696 agggagaaagataattggtgggagtatgattggagggataaaggagacacaagaaatgattgattttgcagccaaacatgatgtgaaacctgatattgag 13372597  T
Q  218 gttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaacac 306  Q
    ||| ||||| | |||||||| |||| ||||||||| ||  || |||||||||||||||||||||| |||||||||||||||||||||||    
T  13372596 gttattccaatagattatgtgaatagtgcaatggatcgtctactcaaagctgatgtgaaatatcgctttgttattgacattggaaacac 13372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 13425754 - 13425595
Alignment:
Q  144 tgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatac 243  Q
    ||||||||||||| ||||| || |||||||||||||||||||| ||| ||||    |||| |||||||||||||||||||||  | |||||||| || ||    
T  13425754 tgattggagggataaaggagactcaagaaatgattgattttgcggccgaacacaatgtaacacctgatattgaggttgttcctattgattatgtcaacac 13425655  T
Q  244 tgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaa 303  Q
     |||||||| ||  | |  ||||| ||||||||||||||||| |||||||| ||||||||    
T  13425654 agcaatggagcgtctcgagaaagcagatgtgaaatatcgattcgttattgatattggaaa 13425595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 307
Target Start/End: Complemental strand, 13453277 - 13453114
Alignment:
Q  144 tgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatac 243  Q
    ||||||||||||| ||||| || |||||||||||||||||||| ||  ||||    ||||| |||||||||||| |  ||||  | |||||||| || ||    
T  13453277 tgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgtaaagcctgatattgagatcattcctattgattatgtcaacac 13453178  T
Q  244 tgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaacaca 307  Q
     || ||||| ||| |  | ||||| |||||||||||||||||||| ||||| ||||||||||||    
T  13453177 agcgatggagcgccttcttaaagcagatgtgaaatatcgatttgtgattgatattggaaacaca 13453114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 13446491 - 13446301
Alignment:
Q  113 tttgtagggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgata 212  Q
    ||||||||||||||| | || | ||| ||| | ||||||||||| || || || |||||||||||||||||||| || |||||    ||||  ||||| |    
T  13446491 tttgtagggagaaagtcaatagctggaagtttaattggagggataaaagagactcaagaaatgattgattttgctgctaaacacaatgtaacgcctgaga 13446392  T
Q  213 ttgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaa 303  Q
    |||||||||||||  | |||||||| || || |||||||| ||  | || ||||  ||||| ||||||||||| || ||||| ||||||||    
T  13446391 ttgaggttgttcctattgattatgtcaacaccgcaatggagcgtcttgttaaaggagatgtcaaatatcgattcgtgattgatattggaaa 13446301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 13418880 - 13418721
Alignment:
Q  144 tgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatac 243  Q
    ||||||||||||| ||||| |  ||||||||| |||||||||||||  ||||    ||||  ||||||||||||||||||||  | |||||||| || ||    
T  13418880 tgattggagggataaaggagagtcaagaaatggttgattttgcagcagaacacaatgtaacgcctgatattgaggttgttcctattgattatgtcaacac 13418781  T
Q  244 tgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaa 303  Q
     |||||||| ||  | |  ||||| ||||| ||||||||||| || ||||| ||||||||    
T  13418780 agcaatggagcgtctcgataaagcagatgttaaatatcgattcgtgattgatattggaaa 13418721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 13386136 - 13386242
Alignment:
Q  200 gtaaaacctgatattgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattg 299  Q
    ||||||||||| ||||| |||||||| ||||||||||| || || ||||| || ||  |  ||||||| ||||| ||||||||||||||  | |||||||    
T  13386136 gtaaaacctgacattgaagttgttcctgtggattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgacattg 13386235  T
Q  300 gaaacac 306  Q
    |||||||    
T  13386236 gaaacac 13386242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 288
Target Start/End: Original strand, 13389870 - 13390012
Alignment:
Q  146 attggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatactg 245  Q
    |||||||| || ||||| || ||||| ||| |||| ||||| || |||||  ||||||||||||| ||||| || ||||| ||||||||||| || || |    
T  13389870 attggaggcatcaaggagactcaagagatgcttgactttgctgctaaacacagcgtaaaacctgacattgaagtcgttcctgtggattatgttaacacag 13389969  T
Q  246 caatggaacgcttagtcaaagctgatgtgaaatatcgatttgt 288  Q
    |||| || ||  |  ||||||| ||||| ||||||||||||||    
T  13389970 caattgagcgactcctcaaagcagatgtcaaatatcgatttgt 13390012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 288
Target Start/End: Original strand, 13394330 - 13394472
Alignment:
Q  146 attggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatactg 245  Q
    |||||||| ||||| || ||||||||||||||||||||||| || |||||     ||||||| || || || ||  | |||||||||||||| || || |    
T  13394330 attggaggcatgaaagagacacaagaaatgattgattttgctgctaaacacaatataaaaccagacatcgaagtcataccagtggattatgttaacacag 13394429  T
Q  246 caatggaacgcttagtcaaagctgatgtgaaatatcgatttgt 288  Q
    ||||| | ||  |  ||||||| ||||| ||||||||||||||    
T  13394430 caatgaagcgactcctcaaagcagatgtcaaatatcgatttgt 13394472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 300
Target Start/End: Original strand, 28431499 - 28431686
Alignment:
Q  113 tttgtagggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgata 212  Q
    ||||||||||||||||  || || |||||  |||| ||||| || ||||| |||||||||||||| |||||||| || ||||||| ||| |||||||| |    
T  28431499 tttgtagggagaaagataataggagggagcctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacatgacgtgaaacctgaaa 28431598  T
Q  213 ttgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattgg 300  Q
    |||| |||||| |||  |||||||| || |||||| |||| ||  |  | ||||| ||||| |||||||||||||||||||| |||||    
T  28431599 ttgaagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgtcaaatatcgatttgttattgatattgg 28431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 47600637 - 47600477
Alignment:
Q  146 attggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatactg 245  Q
    ||||||||||||||||| || ||||| ||| |||||||||| || |||||    |||||||||   ||||| ||  | ||  |||||||||| || ||||    
T  47600637 attggagggatgaaggagactcaagatatgcttgattttgctgctaaacacaatgtaaaacctaccattgaagtcatccctatggattatgttaacactg 47600538  T
Q  246 caatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaacac 306  Q
    ||||||| ||  |  ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  47600537 caatggagcgactcctcaaagcagatgtcaaatatcgatttgtgattgacattggaaacac 47600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University