View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16767_low_14 (Length: 324)
Name: NF16767_low_14
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 32598591 - 32598893
Alignment:
| Q |
8 |
tgaaatgaaattgacccaaatcccattggttgagtactcctcattagttgaccatattgttctactttctcttctctctcaagttttttctacgatgcca |
107 |
Q |
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| T |
32598591 |
tgaaatgaaattgacccaaatcccattggttgagtactcctcattagttcaccatattgttctactttctcttctctctcaagttttttctacgatgcca |
32598690 |
T |
|
| Q |
108 |
gagagagtttatatagtattgttttctcactgctaccttcttttgtcattaaattattatattattgttgcgtttgtgttcctttcgttagctttgttga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32598691 |
gagagagtttatatagtattgttttctcactgctaccttcttttgtcattaaattattatattattgttgcgtttgtgttcctttcgttagctttgttga |
32598790 |
T |
|
| Q |
208 |
gtaatgttattagaaggttgtatgtatagaatccatatgggaaggttgaatgaacctttgctcctttcttcatttttgtcacaaataatagagatggtaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |
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| T |
32598791 |
gtaatgttattagaaggttgtatgtatagaatccatatgggaaggttgaatgaacctttgttcgtttcttcatttttgtcacaaataatagagatggtta |
32598890 |
T |
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| Q |
308 |
agt |
310 |
Q |
| |
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||| |
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| T |
32598891 |
agt |
32598893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 35790342 - 35790287
Alignment:
| Q |
8 |
tgaaatgaaattgacccaaatcccattggttgagtactcctcattagttgaccatattg |
66 |
Q |
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|||||||||| |||||||||||| | ||||| ||| ||||||||||||||||||||| |
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| T |
35790342 |
tgaaatgaaaatgacccaaatcctagtggttaagt---cctcattagttgaccatattg |
35790287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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