View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16767_low_16 (Length: 262)
Name: NF16767_low_16
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 28035290 - 28035533
Alignment:
| Q |
19 |
ctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaaagaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035290 |
ctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaaagaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagt |
28035389 |
T |
|
| Q |
119 |
tgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttatcagtctcagcaaatttgatgagagcttttgatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035390 |
tgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttatcagtctcagcaaatttgatgagagcttttgatg |
28035489 |
T |
|
| Q |
219 |
cttccgtagaaatcaccggttctgtttcatcgagcaacttcacc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035490 |
cttccgtagaaatcaccggttctgtttcatcgagcaacttcacc |
28035533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University