View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16767_low_2 (Length: 804)
Name: NF16767_low_2
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 764; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 19 - 790
Target Start/End: Complemental strand, 54775346 - 54774575
Alignment:
| Q |
19 |
gtttggatgtctcttccaaagatcttccctcctcaacatcgtcaactattacaagacctcatagaatgtactcacaacaaaaacatcctcaaaggtcgaa |
118 |
Q |
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| T |
54775346 |
gtttggatgtctcttccaaagatcttccctccgcaacatcgtcaactattacaagacctcatagaatgtactcacaacaaaaacatcctcaaaggtcgaa |
54775247 |
T |
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| Q |
119 |
cacttcacgctcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgccaaaaccaatcacttatcacacgc |
218 |
Q |
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| T |
54775246 |
cacttcacgctcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgccaaaaccaatcacttatcacacgc |
54775147 |
T |
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| Q |
219 |
tttaaccctctttgattctataaacgacaacgacaaagacgacgtttcatggaactctctcatcaacgctttctctcaaaaccattcctcttcatcttct |
318 |
Q |
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| T |
54775146 |
tttaaccctctttgattctataaacgacaacgacaaagacgacgtttcatggaactctctcatcaacgctttctctcaaaaccattcctcttcatcttct |
54775047 |
T |
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| Q |
319 |
tccttcgctataagcctctttcgtcgtatgatgcgtgccaataatgtgatccctaatgcccatacactcgccggtgttttcttggctgcttctaatcttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54775046 |
tccttcgctataagcctctttcgtcgtatgatgcgtgccaataatgtgatccctaatgcccatacactcgccggtgttttctcggctgcttctaatcttt |
54774947 |
T |
|
| Q |
419 |
ctgacgtagtagccggaaaacaagctcattctgttgcagttaagactggatgttctggtgatgtatatgtgggaagttctcttcttaatatgtattgtaa |
518 |
Q |
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| T |
54774946 |
ctgacgtagtagccggaaaacaagctcattctgttgcagttaagactggatgttctggtgatgtatatgtgggaagttctcttcttaatatgtattgtaa |
54774847 |
T |
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| Q |
519 |
aactggttttgttttcgatgctcgtaaactgtttgacagaatgcctgagagaaatacggtttcttgggctactatgatttctgggtatgcttctagtgat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774846 |
aactggttttgttttcgatgctcgtaaactgtttgacagaatgcctgagagaaatacggtttcttgggctactatgatttctgggtatgcttctagtgat |
54774747 |
T |
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| Q |
619 |
attgctgataaggcggttgaggtttttgaacttatgcggcgtgaggaagagattcaaaatgagtttgctctcactagtgttctaagtgcattgacaagtg |
718 |
Q |
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| T |
54774746 |
attgctgataaggcggttgaggtttttgaacttatgcggcgtgaggaagagattcaaaatgagtttgctctcactagtgttctaagtgcattgacaagtg |
54774647 |
T |
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| Q |
719 |
atgtgtttgtgtacactggtagacaggttcattcacttgctattaaaaatggtttgcttgccattgtctctg |
790 |
Q |
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| T |
54774646 |
atgtgtttgtgtacactggtagacaggttcattcacttgctattaaaaatggtttgcttgccattgtctctg |
54774575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 30163352 - 30163389
Alignment:
| Q |
548 |
tgtttgacagaatgcctgagagaaatacggtttcttgg |
585 |
Q |
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| T |
30163352 |
tgtttgacagaatgcctgagagaaatgtggtttcttgg |
30163389 |
T |
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