View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16767_low_3 (Length: 536)
Name: NF16767_low_3
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 12 - 519
Target Start/End: Complemental strand, 45014077 - 45013570
Alignment:
| Q |
12 |
atgaagggaatgtaagacgaagacactatagaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45014077 |
atgaagggaatgtaagacgaagacactatagaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggt |
45013978 |
T |
|
| Q |
112 |
atggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45013977 |
atggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctgaa |
45013878 |
T |
|
| Q |
212 |
agagttcaaagtgcaacagaatttggatataaccaacaatttcatcacctagtgtctactacaagtaacgagcaacaacccaatccagttcctcttcaac |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45013877 |
agagttcaaagtgcaacagaatttggatataaccaacaatttcatcacctagtgtctactacaagtaacgagcaacaatccaatccagttcctcttcaac |
45013778 |
T |
|
| Q |
312 |
acttttctcgagaaacatattcaaatccttatcagtatgctgcacaagcacatcttcaagctagtggaagtagcaacttcaatcaggatatgcttagttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45013777 |
acttttctcgagaaacatattcaaatccttatcagtatgctgcacaagcacatcttcaagctagtggaagtagcaacttcaatcaggatatgcttagttt |
45013678 |
T |
|
| Q |
412 |
ctatgggagagacatgtttgtttctaattctcaacctttatcaactacatctccgtcttcatcctcatcttctggactatctcagcagcaacaagagctt |
511 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45013677 |
ctatgggagagacatgtttgtttctaattctcaacctttatcaactacatctccgtcttcatcctcatcttctggactatctcagcagcaacaagagctt |
45013578 |
T |
|
| Q |
512 |
ctgagatt |
519 |
Q |
| |
|
|||||||| |
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|
| T |
45013577 |
ctgagatt |
45013570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 41197472 - 41197512
Alignment:
| Q |
53 |
cagaggccatggggaaagtgggctgcagagattcgtgatcc |
93 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
41197472 |
cagagaccatggggtaagtgggctgcagagattcgagatcc |
41197512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 6568884 - 6569067
Alignment:
| Q |
34 |
acactatagaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggtatggctaggaacatttgaaacg |
133 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||| ||||| || || || ||||| || || || || || || || ||| ||||||||||||| || |
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| T |
6568884 |
acactatagaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgataca |
6568983 |
T |
|
| Q |
134 |
gctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctgaaagagtt |
217 |
Q |
| |
|
||||| | |||||| |||||||||| |||||||||||| ||||||||| | ||||||||||| ||||| |||||||||||| |
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|
| T |
6568984 |
gctgaagatgcagctcttgcatatgacaaagctgcactcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagtt |
6569067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 6583043 - 6583226
Alignment:
| Q |
34 |
acactatagaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggtatggctaggaacatttgaaacg |
133 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||| ||||| || || || ||||| || || || || || || || ||| ||||||||||||| || |
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| T |
6583043 |
acactatagaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgacaca |
6583142 |
T |
|
| Q |
134 |
gctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctgaaagagtt |
217 |
Q |
| |
|
||||| | |||||| |||||||||| |||||||| ||| ||||||||| | ||||||||||| ||||| |||||||||||| |
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|
| T |
6583143 |
gctgaagatgcagctcttgcatatgacaaagctgcattcaaattcaaaggcacaaaagctaagcttaatttccctgaaagagtt |
6583226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 44331900 - 44331741
Alignment:
| Q |
53 |
cagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggtatggctaggaacatttgaaacggctgaggctgcagccgttg |
152 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||| ||||| | || || ||||| |||||||| |||||||||||||| || || |||||||| | |
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|
| T |
44331900 |
cagagaccatggggaaaatgggcagcagaaattcgagatccacacaaagcagcaagagtatggcttggaacatttgaaactgcagaagctgcagcaagag |
44331801 |
T |
|
| Q |
153 |
catatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctgaaa |
212 |
Q |
| |
|
| || |||||||||||| | ||||||| ||||| || ||| || ||||| || ||||||| |
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|
| T |
44331800 |
cttacgatgaagctgcattaagattcagaggaaacagagcgaaactcaacttccctgaaa |
44331741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 39360347 - 39360381
Alignment:
| Q |
59 |
ccatggggaaagtgggctgcagagattcgtgatcc |
93 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
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|
| T |
39360347 |
ccatggggaaaatgggctgcagagattcgtgatcc |
39360381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 33735636 - 33735685
Alignment:
| Q |
41 |
agaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtga |
90 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
33735636 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtga |
33735685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 33720982 - 33721036
Alignment:
| Q |
41 |
agaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtgatccga |
95 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
33720982 |
agaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccga |
33721036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 33718960 - 33719017
Alignment:
| Q |
38 |
tatagaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtgatccga |
95 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||| |||| |
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|
| T |
33718960 |
tatagaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccga |
33719017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 10554658 - 10554758
Alignment:
| Q |
104 |
gcaagggtatggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaatt |
203 |
Q |
| |
|
||||| || ||||| || || |||||||| ||||| |||||||| ||| ||||||||||||||| | ||||||||||||| |||||| ||||| |||| |
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|
| T |
10554658 |
gcaagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgcattgagattcaaaggaaacaaagccaagcttaatt |
10554757 |
T |
|
| Q |
204 |
t |
204 |
Q |
| |
|
| |
|
|
| T |
10554758 |
t |
10554758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 13409947 - 13410049
Alignment:
| Q |
110 |
gtatggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctg |
209 |
Q |
| |
|
||||||||||||||||| || || || || |||||||| || ||||||||||||||| | ||||||| |||||||| ||| || ||||| || |||| |
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|
| T |
13409947 |
gtatggctaggaacattcgacacagcagaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctg |
13410046 |
T |
|
| Q |
210 |
aaa |
212 |
Q |
| |
|
||| |
|
|
| T |
13410047 |
aaa |
13410049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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