View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16767_low_5 (Length: 441)
Name: NF16767_low_5
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16767_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 42929095 - 42929509
Alignment:
| Q |
11 |
cacagaactcaaatattcatcttcttcttcatcatggccatggccatattgtcaccaaccaaaaacactctcttttagagctgataacatcaacaaagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929095 |
cacagaactcaaatattcatcttcttcttcatcatggccatggccatattgtcaccaaccaaaaacactctcttttagagctgataacatcaacaaagat |
42929194 |
T |
|
| Q |
111 |
gacactttcaaaaccattaactcagtttacttggacgcttctgaatccttctccactgtttctccaaactgtgattctagcttttcaaaagcttctaatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929195 |
gacactttcaaaaccattaactcagtttacttggatgcttctgaatccttctccactgtttctccaaactgtgattctagcttttcaaaagcttctaatg |
42929294 |
T |
|
| Q |
211 |
atcaagaatccaaacaagttgattcgatcgaaactgtgattcgtggattatcttctgatcggtttttctttgagccagatgagaccaactccattttaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42929295 |
atcaagaatccaaacaagttgattcgatcgaaactgtgattcgtggattatcttctgatcggtttttctttgagccagatgagaccaactccatcttaga |
42929394 |
T |
|
| Q |
311 |
ggttaataataaagctgctgcaattggaggtggtgaaactcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatccttatgtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929395 |
ggttaataataaagctgctgcaattggaggtggtgaaactcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatccttatgtc |
42929494 |
T |
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| Q |
411 |
gattttcgaaagtct |
425 |
Q |
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| T |
42929495 |
gattttcgaaagtct |
42929509 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 25531550 - 25531495
Alignment:
| Q |
36 |
tcttcatcatggccatggccatattgtcaccaaccaaaaacactctcttttagagc |
91 |
Q |
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||||| |||||| | ||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
25531550 |
tcttcttcatggtcttggccatcttgtaaccaaccaaaaacactttcttttagagc |
25531495 |
T |
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