View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16767_low_9 (Length: 405)

Name: NF16767_low_9
Description: NF16767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16767_low_9
NF16767_low_9
[»] scaffold0067 (2 HSPs)
scaffold0067 (1-146)||(43441-43586)
scaffold0067 (241-390)||(43701-43850)
[»] chr3 (6 HSPs)
chr3 (13-129)||(4434805-4434921)
chr3 (13-129)||(4455591-4455707)
chr3 (13-129)||(30067466-30067582)
chr3 (91-145)||(15693809-15693862)
chr3 (91-145)||(15696123-15696176)
chr3 (91-145)||(15710425-15710478)
[»] scaffold0378 (1 HSPs)
scaffold0378 (40-123)||(1927-2009)
[»] scaffold0050 (1 HSPs)
scaffold0050 (40-123)||(40006-40088)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-129)||(122419-122516)
[»] chr8 (3 HSPs)
chr8 (52-143)||(19850040-19850130)
chr8 (52-143)||(19856076-19856166)
chr8 (52-143)||(36247973-36248062)
[»] chr5 (2 HSPs)
chr5 (40-123)||(22960797-22960879)
chr5 (39-88)||(23576350-23576398)
[»] chr7 (3 HSPs)
chr7 (40-123)||(15684808-15684890)
chr7 (294-333)||(36899195-36899234)
chr7 (69-129)||(38411924-38411984)
[»] chr1 (3 HSPs)
chr1 (40-115)||(45497987-45498061)
chr1 (39-101)||(20978936-20978997)
chr1 (303-376)||(20979212-20979287)
[»] chr4 (1 HSPs)
chr4 (40-115)||(22174585-22174659)
[»] scaffold0011 (1 HSPs)
scaffold0011 (39-101)||(201641-201702)
[»] scaffold0182 (1 HSPs)
scaffold0182 (40-101)||(6399-6459)


Alignment Details
Target: scaffold0067 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 43441 - 43586
Alignment:
Q  1 atgaaagggaattgggcttttggaaaacagatggggcgttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43441 atgaaagggaattgggcttttggaaaacagatggggcgttgggcttaaagggaaccagttttaggtccggttcgattcaagggctgaactggttcggcct 43540  T
Q  101 aacagtatatataggctgtggactggtttatttccatttttcattc 146  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  43541 aacagtatatataggctgtggactggtttttttccatttttcattc 43586  T

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Target: scaffold0067; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 241 - 390
Target Start/End: Original strand, 43701 - 43850
Alignment:
Q  241 gcggcggcaccaccgcgtcggaaccctatcaatttannnnnnnnnnnnnnnnagttctttctacttgttctcttcttctctacttgattctaaccctaaa 340  Q
    ||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43701 gcggcggcaccaccgcgtcggaaccctatcaatttattttttgattttttttagttctttctacttgttctcttcttctctacttgattctaaccctaaa 43800  T
Q  341 ttcaataacacgcacacgcagacctagatctaaaggggaacaaaaatact 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43801 ttcaataacacgcacacgcagacctagatctaaaggggaacaaaaatact 43850  T

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Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 4434921 - 4434805
Alignment:
Q  13 tgggcttttggaaaacagatggggcgttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatat 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  4434921 tgggcctttggaaaacagatggggcgttgggcttaaagggaaccggttttaggtccggttcggttcaagcgctgaaccggttcggcctaacagtatatat 4434822  T
Q  113 aggctgtggactggttt 129  Q
    |||||||||||||||||    
T  4434821 aggctgtggactggttt 4434805  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 4455707 - 4455591
Alignment:
Q  13 tgggcttttggaaaacagatggggcgttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatat 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  4455707 tgggcctttggaaaacagatggggcgttgggcttaaagggaaccggttttaggtccggttcggttcaagcgctgaaccggttcggcctaacagtatatat 4455608  T
Q  113 aggctgtggactggttt 129  Q
    |||||||||||||||||    
T  4455607 aggctgtggactggttt 4455591  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 30067466 - 30067582
Alignment:
Q  13 tgggcttttggaaaacagatggggcgttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatat 112  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  30067466 tgggcctttggaaaacagatggagcgttgggcttaaagggaaccggttttaggtccggtccggttcaagcgctgaaccggttcggcctaatagtatatat 30067565  T
Q  113 aggctgtggactggttt 129  Q
    |||||||||||||||||    
T  30067566 aggctgtggactggttt 30067582  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 15693862 - 15693809
Alignment:
Q  91 ggttcggcctaacagtatatataggctgtggactggtttatttccatttttcatt 145  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||    
T  15693862 ggttcagcctagcagtataaataggctgtggactggttt-ttttcatttttcatt 15693809  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 15696176 - 15696123
Alignment:
Q  91 ggttcggcctaacagtatatataggctgtggactggtttatttccatttttcatt 145  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||    
T  15696176 ggttcagcctagcagtataaataggctgtggactggttt-ttttcatttttcatt 15696123  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 15710478 - 15710425
Alignment:
Q  91 ggttcggcctaacagtatatataggctgtggactggtttatttccatttttcatt 145  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||    
T  15710478 ggttcagcctagcagtataaataggctgtggactggttt-ttttcatttttcatt 15710425  T

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Target: scaffold0378 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 2009 - 1927
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggac 123  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  2009 tgggcttaaggggaaccggtttt-ggttcggttcggttcaagggctaaaccggttcggcctaacagtatatataggctatggac 1927  T

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Target: scaffold0050 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 40006 - 40088
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggac 123  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||||    
T  40006 tgggcttaaggggaaccggtttt-ggttcggttcggttcaagggctaaaccggttcggccaaacagtatatataggctatggac 40088  T

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Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 122516 - 122419
Alignment:
Q  20 ttggaaaacagatggggcgttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgt 119  Q
    |||||||||||||||||||||||||| ||||||||||            ||||||||||||| || |||| ||||||||||||||||| ||||||| |||    
T  122516 ttggaaaacagatggggcgttgggctgaaagggaacc------------ggttcggttcaagcgcggaaccggttcggcctaacagtacatataggttgt 122429  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 19850130 - 19850040
Alignment:
Q  52 gaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggactggtttatttccatttttca 143  Q
    ||||||||||| |||| ||||||||||||||| ||||| ||||| ||||| | ||||| ||||| ||||||||||||| ||| |||||||||    
T  19850130 gaaccagtttt-ggtctggttcggttcaagggttgaaccggttcagcctagcggtataaataggttgtggactggttttttttcatttttca 19850040  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 19856166 - 19856076
Alignment:
Q  52 gaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggactggtttatttccatttttca 143  Q
    ||||||||||| |||| ||||||||||||||| ||||| ||||| ||||| | ||||| ||||| ||||||||||||| ||| |||||||||    
T  19856166 gaaccagtttt-ggtctggttcggttcaagggttgaaccggttcagcctagcggtataaataggttgtggactggttttttttcatttttca 19856076  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 36248062 - 36247973
Alignment:
Q  52 gaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggactggtttatttccatttttca 143  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||| ||||| | ||||| ||||| ||||||||||||| ||| |||||||||    
T  36248062 gaaccagtttt-ggtctggttcggttcaagggctgaaccggttcagcctagcggtataaataggttgtggactggttt-ttttcatttttca 36247973  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 22960797 - 22960879
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggac 123  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||||||| | ||| |||||||| |||||||||||| |||||    
T  22960797 tgggcttaaggggaaccggtttt-ggttcggttcggttcaagggctgaaccgattcagcctaacaatatatataggctatggac 22960879  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 23576350 - 23576398
Alignment:
Q  39 ttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaa 88  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  23576350 ttgggcttaaggggaaccggtttt-ggtccggttcggttcaagggctgaa 23576398  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 15684890 - 15684808
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggac 123  Q
    |||||||||  |||||| ||||| ||| |||||||||||||||||||||| | ||| |||||||| |||||||||||| |||||    
T  15684890 tgggcttaagaggaaccggtttt-ggttcggttcggttcaagggctgaaccgattcagcctaacaatatatataggctatggac 15684808  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 36899234 - 36899195
Alignment:
Q  294 gttctttctacttgttctcttcttctctacttgattctaa 333  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  36899234 gttctttctacttgttctcttctcctctactcgattctaa 36899195  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 38411984 - 38411924
Alignment:
Q  69 ggttcggttcaagggctgaactggttcggcctaacagtatatataggctgtggactggttt 129  Q
    |||||||||||||| | |||| ||||| ||||| | ||||| ||||| |||||||||||||    
T  38411984 ggttcggttcaaggacggaaccggttcagcctagcggtataaataggttgtggactggttt 38411924  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 45498061 - 45497987
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatatagg 115  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| || | ||| ||||||||||    
T  45498061 tgggcttaaggggaaccggtttt-ggtccggttcggttcaagggctgaaccggttcagcttgacactatatatagg 45497987  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 20978936 - 20978997
Alignment:
Q  39 ttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggccta 101  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||    
T  20978936 ttgggcttaaagggaaccggtttt-ggtccggttcggttcaatggctgaaccggttcagccta 20978997  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 20979212 - 20979287
Alignment:
Q  303 acttgttctcttcttctctacttgattctaaccctaaatt--caataacacgcacacgcagacctagatctaaagg 376  Q
    ||||||| |||||  ||||||  |||||||| ||||||||  ||||||||||||| |  |||||||||||||||||    
T  20979212 acttgttttcttcccctctacacgattctaagcctaaattttcaataacacgcacccagagacctagatctaaagg 20979287  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 22174585 - 22174659
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggcctaacagtatatatagg 115  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||| ||||| ||||| || ||| | ||||||||||    
T  22174585 tgggcttaaggggaaccggtttt-ggttcggttcggttcaaggggtgaaccggttcagcttaatactatatatagg 22174659  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 201641 - 201702
Alignment:
Q  39 ttgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggccta 101  Q
    |||||||||||||||||| ||||| |||||||||||| |||| || ||||| ||||| |||||    
T  201641 ttgggcttaaagggaaccggtttt-ggtccggttcggctcaatggttgaaccggttcagccta 201702  T

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Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 6459 - 6399
Alignment:
Q  40 tgggcttaaagggaaccagttttaggtccggttcggttcaagggctgaactggttcggccta 101  Q
    ||||||||||||||| | ||||| ||||||||||||||||| |||||||  ||||| |||||    
T  6459 tgggcttaaagggaaacggtttt-ggtccggttcggttcaatggctgaaacggttcagccta 6399  T

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