View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_13 (Length: 485)
Name: NF16768_high_13
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 53524937 - 53525392
Alignment:
| Q |
13 |
aatattccatgaaaacactatccacatttgattgaaacaaaattggagggataaagtacacacctatacaagtcacattgaagtgaaccagaaggacctg |
112 |
Q |
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| T |
53524937 |
aatattccatgaaaacactatccacatttgattgaaacaaaattggagggataaagtacacacctatacaagtcacattgaagtgaaccagaaggacctg |
53525036 |
T |
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| Q |
113 |
gactggcaactccgccggcagtttccacaatgcacagaacctccgacctctccttaccaacaccactttcaaccacatcgcgaaaacatcgctgcaacgt |
212 |
Q |
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| T |
53525037 |
gactggcaactccaccggcagtttccacaatgcacagaacctccgacctctccttaccaacaccactttcaaccacatcgcgaaaacatcgctgcaacgt |
53525136 |
T |
|
| Q |
213 |
tcccagcacagctgaatcctccacaacgaaaccttccctctcagccgctaaatgcggcgacacagcctcttcccatgcatacaacgtcttacatatcaac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53525137 |
tcccagcacagctgaatcctccacaacgaaaccttccctctcagccgctaaatgcggcgacacagcctcttcccatgcatacaacgttttacatatcaac |
53525236 |
T |
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| Q |
313 |
tccgaagagtcagaaccatcttcaccgacgaaaccgttaatttccttcacctggttcgtcgatgcggcgggagggacattgagaacacggttagataggg |
412 |
Q |
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| T |
53525237 |
tccgaagagtcagaaccatcttcaccgacgaaaccgttaatttccttcacctgattcgtccatgcggcgggagggacattgagaacacggttagataggg |
53525336 |
T |
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| Q |
413 |
aaattgaaatgcgagagttgtaaggattgcggttatggaggtggcggagtttattg |
468 |
Q |
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| T |
53525337 |
aaattgaaatgcgagagttgtaaggattgcggttatggaggtggcggagtttattg |
53525392 |
T |
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