View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_14 (Length: 481)
Name: NF16768_high_14
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Complemental strand, 47711788 - 47711327
Alignment:
| Q |
10 |
tcatcactgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggtgtccatttcatagcaatcacctgtgctccaaaac |
109 |
Q |
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| T |
47711788 |
tcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggtgtccatttcatagcaatcacctgtgctccaaaac |
47711689 |
T |
|
| Q |
110 |
aatgcatgagtactaaagtttgtcttttttattgtttctaatttctatatacaatactgaatttttcattcatatattgcaaaaaggaaaaatatttact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47711688 |
aatgcatgagtactaaagtttgtcttttttattgtttctaatttctatatacaatactgaatttttcattcataaattgcaaaaaggaaaaatatttact |
47711589 |
T |
|
| Q |
210 |
cagttttcaacaaatatctgcattacaaggtcaaaattttcattattgtcaaaaataataccattgcgcgagaagaagtgtggcgggtctctagtaaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47711588 |
cagttttcaacaaatatctgcattacaaggtcaaaattttcattattgtcaaaaataataccattgcgcgagaagaagtgcggcgggtctctagtaaatg |
47711489 |
T |
|
| Q |
310 |
gttcatctcctgtatcaacattcttgacttaggggggcatattacacctcatctttctcatagtaatattattcgccgcagtacttttatctgaggcaga |
409 |
Q |
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| T |
47711488 |
gttcatctcctgtatcaacattcttgacttaggggggcatattacaccttatctttctcatagtaatattattcgccgcagtacttttatctgaggcaga |
47711389 |
T |
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| Q |
410 |
caactacttaatctgaggagaattttcaagacgagtctgattagtcaatgaaattgaactctgtg |
474 |
Q |
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| T |
47711388 |
caactacttaatctgaggagaattttcaa---gagtctgattagtcaatgaaattgaactctgtg |
47711327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 256 - 474
Target Start/End: Original strand, 43305474 - 43305691
Alignment:
| Q |
256 |
tgtcaaaaataataccattgcgcgagaagaagtgtggcgggtctctagtaaatggttcatctcctgtatcaacattcttgacttaggggggcatattaca |
355 |
Q |
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||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43305474 |
tgtcaaaaataataccattgcacgagaagaagtgcggcggcgctctagcaaatggttcatctcctgtatcaacattcttgacttagggg-gcatattaca |
43305572 |
T |
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| Q |
356 |
cctcatctttctcatagtaatattattcgccgcagtacttttatctgaggcagacaactacttaatctgaggagaattttcaagacgagtctgattagtc |
455 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||| |
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| T |
43305573 |
cctcatctttctcacagtaatattattcgccgcagtacttttatctgaggcaggcaacttcttaatctgaggagaactttcaagacgagtccgattagtc |
43305672 |
T |
|
| Q |
456 |
aatgaaattgaactctgtg |
474 |
Q |
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| T |
43305673 |
aatgacattgaactctgtg |
43305691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 45603784 - 45603690
Alignment:
| Q |
22 |
actaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggtgtccatttcatagcaatcacctgtgctccaaaacaatgcat |
116 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45603784 |
actaaaccagcccctagaagagcaatagatgtaatgaccatgatcaaaattggtgtccatttcatagcaatcacctgtgctccaaaacaatgcat |
45603690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 45603672 - 45603623
Alignment:
| Q |
117 |
gagtactaaagtttgtcttttttattgtttctaatttctatatacaatac |
166 |
Q |
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|||| ||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
45603672 |
gagtgctaaagtttatcttttttattgtttctaatttctgtatacaatac |
45603623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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