View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16768_high_19 (Length: 426)
Name: NF16768_high_19
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 20140710 - 20140307
Alignment:
| Q |
19 |
tgtgagttttaattctataaaggaggatgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgta |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140710 |
tgtgagttttaattctgtaaaggaggatgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgta |
20140611 |
T |
|
| Q |
119 |
tttactgctggtcaaagaatttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgtta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20140610 |
tttactgctggtcaaagaatttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtttattccgtgaatcctgtgtta |
20140511 |
T |
|
| Q |
219 |
atgtggacgaaaaatacgtcaaagatttatcaatactcggtcgtgatttagcacgtgttataatgattgacagctccccgcattcatttgggttccaagt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140510 |
atgtggacgaaaaatacgtcaaagatttatcaatactcggtcgtgatttagcacgtgttacaatgattgacagctccccgcattcatttgggttccaagt |
20140411 |
T |
|
| Q |
319 |
ggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaatttagtagaagttgatgat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20140410 |
ggagaatggaataccaattgagacttggtttgcagatccttcagataataaattgctttcattgattcctttcttggagagtttagtagaagttgatgat |
20140311 |
T |
|
| Q |
419 |
gtcc |
422 |
Q |
| |
|
|||| |
|
|
| T |
20140310 |
gtcc |
20140307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 38589243 - 38588993
Alignment:
| Q |
46 |
tgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgtatttactgctggtcaaagaatttatgct |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||||| |
|
|
| T |
38589243 |
tgtctatgtacgctgccgtcctcacctaaaagaattccttgagagagtttctggtctttttgagattattatatttacagctagtcaaagtatttatgct |
38589144 |
T |
|
| Q |
146 |
gacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaatacgtcaaagatt |
245 |
Q |
| |
|
|| ||||| ||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| | || ||| ||||||||| |
|
|
| T |
38589143 |
gagcaactcctaaatttgcttgatccaaagcggaagatatttcgccatcgtgtattccgtgaatcttgtgttaaagtggaggggaattacctcaaagatt |
38589044 |
T |
|
| Q |
246 |
tatcaatactcggtcgtgatttagcacgtgttataatgattgacagctccc |
296 |
Q |
| |
|
|| || | || ||| |||||||||||| |||||| || ||||||| ||||| |
|
|
| T |
38589043 |
taacagtgcttggttgtgatttagcacatgttatgataattgacaactccc |
38588993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 46 - 297
Target Start/End: Complemental strand, 38595558 - 38595307
Alignment:
| Q |
46 |
tgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgtatttactgctggtcaaagaatttatgct |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || || ||| |||||| |||||||||||||| ||||||| ||| ||||||| ||||||||| |
|
|
| T |
38595558 |
tgtctatgtacgctgccgtcctcacctaaaagagtttctcgagagagtctctggtctttttgagattattatatttaccgctagtcaaagtatttatgct |
38595459 |
T |
|
| Q |
146 |
gacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaatacgtcaaagatt |
245 |
Q |
| |
|
|| ||||| |||| ||||||||| | |||||||||||||| |||||| |||||||||||||||||||| ||||||| | || ||| ||||||||| |
|
|
| T |
38595458 |
gagcaactcctaaacgtgcttgatccgaagcggaagatatttcgccatcgtgtattccgtgaatcctgtgtttatgtggaggggaattacctcaaagatt |
38595359 |
T |
|
| Q |
246 |
tatcaatactcggtcgtgatttagcacgtgttataatgattgacagctcccc |
297 |
Q |
| |
|
|| || | ||||||||||||||||||| |||||| || ||||||| |||||| |
|
|
| T |
38595358 |
taacagtgctcggtcgtgatttagcacatgttatgataattgacaactcccc |
38595307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 38594028 - 38593909
Alignment:
| Q |
303 |
catttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaattt |
402 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| || ||||||||||||| | ||| |
|
|
| T |
38594028 |
catttggattccaagtggacaatggaataccaattgagagttggtttgatgatccttcagataaagaattgcttttgttacttcctttcttggaaagttt |
38593929 |
T |
|
| Q |
403 |
agtagaagttgatgatgtcc |
422 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
38593928 |
ggtaggagttgatgatgtcc |
38593909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 38588505 - 38588386
Alignment:
| Q |
303 |
catttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaattt |
402 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||||| ||||| ||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
38588505 |
catttggattccaagtggacaatggaataccaattaagagttggtttggcgatccttcggataaagaattgcttttattacttcctttcttggagagttt |
38588406 |
T |
|
| Q |
403 |
agtagaagttgatgatgtcc |
422 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
38588405 |
ggtaggagttgatgatgtcc |
38588386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 15836140 - 15835982
Alignment:
| Q |
45 |
atgtctatgtacgctatcgtcctcacctaaaagaattccttgacgaagtttctggtatttttgagattattgtatttactgctggtcaaagaatttatgc |
144 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || || || |||||| ||||||| |
|
|
| T |
15836140 |
atgtctatgtacggtttcgtcctcacctaaaagaattcctttacgaagttcctggtctttttgagattattgta--tattgatgctcaaagtatttatga |
15836043 |
T |
|
| Q |
145 |
tgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgt |
205 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||| || ||||| || |||||||||||||| |
|
|
| T |
15836042 |
tgacaaactcctaaatatgcttgacccaagccgaaaaatattctgttatcgtctattccgt |
15835982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 419
Target Start/End: Complemental strand, 15835956 - 15835801
Alignment:
| Q |
263 |
gatttagcacgtgttataatgattgacagctccccgcattcatttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcag |
362 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||| |||| |||| |||||||||||||||||| | ||| |||| ||| ||||||| |||||||||||| |
|
|
| T |
15835956 |
gatttagcatgtgttataatggttgaattctccca-cattaattttggttccaagtggagaatgaattactaattaagagttggttttctgatccttcag |
15835858 |
T |
|
| Q |
363 |
ataataaattgctttcattgattcctttcttggagaatttagtagaagttgatgatg |
419 |
Q |
| |
|
|| | ||||| ||| |||| ||||||||||| ||| ||| |||| ||||||||||| |
|
|
| T |
15835857 |
atgaagaattgattttattgcttcctttcttgaagagttttgtaggagttgatgatg |
15835801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University