View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_20 (Length: 425)
Name: NF16768_high_20
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 297 - 403
Target Start/End: Original strand, 39838322 - 39838428
Alignment:
| Q |
297 |
cccataacccattgtgagtgtgaatgtgatgattgaagaaacctttccaagtaaagaattattcccccataatatttatatatgctactaatccctccca |
396 |
Q |
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| T |
39838322 |
cccataacccattgtgagtgtgaatgtgatgattgaagaaacctttccaagtaaagaattattcccccataatatttatatatgctactaatccctccca |
39838421 |
T |
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| Q |
397 |
cattatt |
403 |
Q |
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||||||| |
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| T |
39838422 |
cattatt |
39838428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 39838051 - 39838156
Alignment:
| Q |
21 |
aatacctaaagtattttcaatggaggaaacatgcgagaaataggggaaaaaatatatacgtacataagagtcaattagtgcctaattaaactttatttgt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39838051 |
aatacctaaagtattttcaatggaggaaacatgcgagaaatagggaaaaaaatatatacgtacataagagtcaattagtgcctaattaaactttatttgt |
39838150 |
T |
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| Q |
121 |
ggaacc |
126 |
Q |
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||||| |
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| T |
39838151 |
agaacc |
39838156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 39838232 - 39838295
Alignment:
| Q |
201 |
ctatacatacataagagtcaattagtacctaattaaactttatttgtagaacaaaaaactttaa |
264 |
Q |
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| T |
39838232 |
ctatacatacataagagtcaattagtacctaataaaactttatttgtagaacaaaaaactttaa |
39838295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 31288680 - 31288744
Alignment:
| Q |
297 |
cccataacccattgtgagtgtgaatgtgatgattgaagaaacctttccaagtaaagaattattcc |
361 |
Q |
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| T |
31288680 |
cccataacccattgtgaatgtgaatgtgatggttgaagaaacctttccaaataaagaattattcc |
31288744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 39838189 - 39838283
Alignment:
| Q |
26 |
ctaaagtattttcaatggaggaaacatgcgagaaataggggaaaaaatatatacgtacataagagtcaattagtgcctaattaaactttatttgtggaac |
125 |
Q |
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| T |
39838189 |
ctaaaatattttcaatggaggaaacat-----aaatgggggaaaaaatctatacatacataagagtcaattagtacctaataaaactttatttgtagaac |
39838283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 39838105 - 39838168
Alignment:
| Q |
202 |
tatacatacataagagtcaattagtacctaattaaactttatttgtagaa-caaaaaactttaa |
264 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
39838105 |
tatacgtacataagagtcaattagtgcctaattaaactttatttgtagaaccaaaaaactttaa |
39838168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 31292169 - 31292112
Alignment:
| Q |
311 |
tgagtgtgaatgtgatgattgaagaaacctttccaagtaaagaattattcccccataa |
368 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |
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| T |
31292169 |
tgagtgtgaatgtgatgatcaaagaaacctttccaagtaacgaattatacacccataa |
31292112 |
T |
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