View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_21 (Length: 424)
Name: NF16768_high_21
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 44787991 - 44788413
Alignment:
| Q |
1 |
aacaacacaattatgagaattattacacagaccatttatgatataagccatcctttcctttgtataaactatgttacaatgggtccaaatacacaaccct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44787991 |
aacaacacaattatgagaattattacacagaccatttatgatataagccatcctttcctttgtataaactatgttacaatgggtcaaaatacacaaccct |
44788090 |
T |
|
| Q |
101 |
actatcgtaagcttactcaaaatcagttattcgtggctttgttctcatctatatggaactgagaaaaccaaacaatgatgaaagtacaactctaatattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44788091 |
actatcgtaagcttactcaaaatcagttattcgtggctttgttctcatctatatggaactgagaaaaccaaacaatgataaaagtacaactctaatattt |
44788190 |
T |
|
| Q |
201 |
ctcgcaagaatgatatgaatgaaaaacagaaacaaaacctaatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgtactcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44788191 |
ctcgcaagaatgatatgaatgaaaaacagaaacaaaacctaatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgttctcag |
44788290 |
T |
|
| Q |
301 |
tttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcca |
400 |
Q |
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| T |
44788291 |
tttcacattttagtgataaaggaaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcca |
44788390 |
T |
|
| Q |
401 |
tacccttccctgctcgtagaact |
423 |
Q |
| |
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| T |
44788391 |
tacccttccctgctcgtagaact |
44788413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 244 - 424
Target Start/End: Original strand, 44786556 - 44786736
Alignment:
| Q |
244 |
agagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgtactcagtttcacattttactgataaagggaatatatttggtatgacgtc |
343 |
Q |
| |
|
|||||||||||||||||||||| | || || | ||||||| | ||| | |||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
44786556 |
agagggagttttctacctcaaatatgtcataattcctcttctatactttattctcagtttcacattttactgataaagggtatatatttggtatgacgcc |
44786655 |
T |
|
| Q |
344 |
cctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactc |
424 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||| ||| ||| ||||||| |||| |
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| T |
44786656 |
cctgagcaaaaatttggccagtttttttcttccttaactccacgcttataacagctatagtctttcctactcgtaggactc |
44786736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 302 - 422
Target Start/End: Original strand, 44799934 - 44800054
Alignment:
| Q |
302 |
ttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccat |
401 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
44799934 |
ttcacattttactgacaaagggaagatacttggtatgacgcccttgagcaaaaatttggcccgtctttttcttcctgaactctacgcttacaacagctat |
44800033 |
T |
|
| Q |
402 |
acccttccctgctcgtagaac |
422 |
Q |
| |
|
| | || ||| |||||||||| |
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|
| T |
44800034 |
agcatttcctactcgtagaac |
44800054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 296 - 422
Target Start/End: Original strand, 44783655 - 44783781
Alignment:
| Q |
296 |
ctcagtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaac |
395 |
Q |
| |
|
||||||||||||||||||| ||| || || |||| ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||| |
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| T |
44783655 |
ctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttacaac |
44783754 |
T |
|
| Q |
396 |
agccatacccttccctgctcgtagaac |
422 |
Q |
| |
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||| ||| |||| ||| |||||||||| |
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|
| T |
44783755 |
agctataacctttcctactcgtagaac |
44783781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 44791978 - 44792076
Alignment:
| Q |
300 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagc |
398 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
44791978 |
gtttcacattttacttacaaagggaatatatttggtatgacgcccttgagcaaaaacttgtccagtctttttcttcttgaactccacgcttacaacagc |
44792076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 44803783 - 44803879
Alignment:
| Q |
302 |
ttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagc |
398 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| |||| || |||||||||| |||| | |||||||||||||| |||||||||||||||||||| |
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|
| T |
44803783 |
ttcacattttactcctaaagggaagatattttgtaagacgcccttgagcaaaaacttggtccgtctttttcttcctcaactccacgcttacaacagc |
44803879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 44796902 - 44796971
Alignment:
| Q |
329 |
atttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagc |
398 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
44796902 |
attttgtatgacgcccttgagcaaaaacttggccagtttttttcttcctcaactccacgcttagaacagc |
44796971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 241 - 361
Target Start/End: Complemental strand, 36681470 - 36681351
Alignment:
| Q |
241 |
aatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgtactcagtttcacattttactgataaagggaatatatttggtatgac |
340 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36681470 |
aatagagggagttttctacctcaaaa-tttcgtatatcctcttctgtcctttgttctcagtttcacattttactgataaagggaatatatttggtatgac |
36681372 |
T |
|
| Q |
341 |
gtccctgagcaaaaatttggc |
361 |
Q |
| |
|
| ||| ||||||||||||||| |
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|
| T |
36681371 |
gcccccgagcaaaaatttggc |
36681351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 36681625 - 36681503
Alignment:
| Q |
27 |
acagaccatttatgatataagccatcctttcctttgtataa------actatgttacaatgggtccaaatacacaaccctactatcgtaagcttactcaa |
120 |
Q |
| |
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|||||||||| ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
36681625 |
acagaccattcatggtataagccatcctctcctttgtataactttaaactatgttacaatgggtccaaatacacaaccctactattgtaaggttactcaa |
36681526 |
T |
|
| Q |
121 |
aatcagttattcgtggctttgtt |
143 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
36681525 |
aatcagttattcgtggctttgtt |
36681503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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