View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_22 (Length: 419)
Name: NF16768_high_22
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 217 - 404
Target Start/End: Original strand, 49685202 - 49685389
Alignment:
| Q |
217 |
aacatgcatattccgagcagttatcatggtgtgcaccaatgcccatatctcagcagttacagaattgttgcggccaagattgcagtaaaaatcttggatg |
316 |
Q |
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| T |
49685202 |
aacatgcatattccgagcaattctcatggtgtgcaccaatgcccatatctcagcagttacagaattgttgcggccaagattgcagtaaaaatcttggatg |
49685301 |
T |
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| Q |
317 |
aaatctccacgaaatctcttagtaatcctccacaaggcgattgaacattgactttattatgagatccatcagcattaaatttataagt |
404 |
Q |
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| T |
49685302 |
aaagctccacgaaatctcttagtaatcctccacaaggcgattgaacattgactttattatgagatccatcagcattaaatttataagt |
49685389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 49684988 - 49685102
Alignment:
| Q |
1 |
tcagcttagtgatctatgtttctagatgtacttctaattttctctaaggcactttatttttaatccgaaaagataaatactacggaaactcacatacaca |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684988 |
tcagcttagtgatctatgtttctagatatacttctaattttctccaaggcactttatttttaatccgaaaagataaatactacggaaactcacatacaca |
49685087 |
T |
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| Q |
101 |
agtgtacattcaaac |
115 |
Q |
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| T |
49685088 |
agtgtacattcaaac |
49685102 |
T |
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