View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_27 (Length: 365)
Name: NF16768_high_27
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_27 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 73108 - 72781
Alignment:
| Q |
18 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
117 |
Q |
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| T |
73108 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
73009 |
T |
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| Q |
118 |
atgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaattctctcta |
217 |
Q |
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| T |
73008 |
atgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaattggttttagaatttcaagataaaatgagatcatgtcttttgaatt--ctcta |
72911 |
T |
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| Q |
218 |
ttgttcgttgttcagtaaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatc |
317 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
72910 |
ttgctcgttgttcaataaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttcagatcaatctcttgactcggaatc |
72811 |
T |
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| Q |
318 |
ctcttcttataaggttacaatccatttaggtga |
350 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
72810 |
ctcttc---taaggttacaatccatttaggtga |
72781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 8437859 - 8438163
Alignment:
| Q |
18 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437859 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttgg |
8437958 |
T |
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| Q |
118 |
atgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaattctctcta |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||| |
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| T |
8437959 |
atgtgtaaaaatgggagggttacgataatttgtaaaatgcgagtaaatcggttttagaatttcaagataaaatgagatcatgtcttctgaat--tctcta |
8438056 |
T |
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| Q |
218 |
ttgttcgttgttcagtaaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatc |
317 |
Q |
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| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
8438057 |
tagctcgttgtttagtaaattgcacttatcatctacaattattctcctagattcacgatgaattaataaatcgttctgataaatctcttgactcagaatc |
8438156 |
T |
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| Q |
318 |
ctcttct |
324 |
Q |
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||||||| |
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| T |
8438157 |
ctcttct |
8438163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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