View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_34 (Length: 319)
Name: NF16768_high_34
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 5084059 - 5083770
Alignment:
| Q |
3 |
cttcttctttttcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggtat |
102 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
5084059 |
cttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtac |
5083960 |
T |
|
| Q |
103 |
catttctcctcaattgggaaatctctctttccttgctgttcttgatctacatggcaatagttttcatggtgagttaccacttgagttacttcagttgaag |
202 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
5083959 |
aatttcccctcaattgggaaatctctctttccttgtatttcttgatctacaaggaaatagtttccatggtgagttaccacatgagttacttcagttgaag |
5083860 |
T |
|
| Q |
203 |
agattaaagttgttgaattcgagctacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggat |
292 |
Q |
| |
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||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5083859 |
agattgaaattgttgaatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttatcaaaacttcaacaattggat |
5083770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 310
Target Start/End: Original strand, 5094009 - 5094316
Alignment:
| Q |
3 |
cttcttctttttcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggtat |
102 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
5094009 |
cttcttctttgtcttcatgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtac |
5094108 |
T |
|
| Q |
103 |
catttctcctcaattgggaaatctctctttccttgctgttcttgatctacatggcaatagttttcatggtgagttaccacttgagttacttcagttgaag |
202 |
Q |
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| T |
5094109 |
aatttctcctcaattgggaaatctttctttccttattgttcttgatttacagggcaatagtttccatggtgagttaccacatgagttgcttcagttgaaa |
5094208 |
T |
|
| Q |
203 |
agattaaagttgttgaattcgagctacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggatcttggcttta |
302 |
Q |
| |
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||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
5094209 |
agattgaaattgttgaatttaagcaacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggatattagctata |
5094308 |
T |
|
| Q |
303 |
ataatatt |
310 |
Q |
| |
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|||||||| |
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| T |
5094309 |
ataatatt |
5094316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 307
Target Start/End: Original strand, 5111012 - 5111316
Alignment:
| Q |
3 |
cttcttctttttcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggtat |
102 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||| |||||| |
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| T |
5111012 |
cttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtac |
5111111 |
T |
|
| Q |
103 |
catttctcctcaattgggaaatctctctttccttgctgttcttgatctacatggcaatagttttcatggtgagttaccacttgagttacttcagttgaag |
202 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
5111112 |
aatttctcctcaattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaag |
5111211 |
T |
|
| Q |
203 |
agattaaagttgttgaattcgagctacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggatcttggcttta |
302 |
Q |
| |
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||||| || | |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| ||||| |
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| T |
5111212 |
agattgaaatggttggatttgagtgacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttacttta |
5111311 |
T |
|
| Q |
303 |
ataat |
307 |
Q |
| |
|
||||| |
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|
| T |
5111312 |
ataat |
5111316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 14427843 - 14427589
Alignment:
| Q |
1 |
tgcttcttctttttcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14427843 |
tgcttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggt |
14427744 |
T |
|
| Q |
101 |
atcatttctcctcaattgggaaatctctctttccttgctgttcttgatctacatggcaatagttttcatggtgagttaccacttgagttacttcagttg- |
199 |
Q |
| |
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| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| ||| |
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| T |
14427743 |
aacatttctcctcaattaggaaatctctctttccttgttgttcttgatctacatggcaatagtttccatggtgagttaccacatgagttatttcaattgc |
14427644 |
T |
|
| Q |
200 |
--aagagattaaagttgttgaattcgagctacaatgattttgttggagaaattcc |
252 |
Q |
| |
|
|| ||||| || ||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
14427643 |
ataatagattgaaaatgttggatttgagcaacaatgattttgttggagaaattcc |
14427589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 16873377 - 16873519
Alignment:
| Q |
111 |
ctcaattgggaaatctctctttccttgctgttcttgatctacatggcaatagttttcatggtgagttaccacttgagttacttcagttgaagagattaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||||||||||| |||| ||||||||||| || ||||| | || |
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| T |
16873377 |
ctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttacttcatctgcagagactgaa |
16873476 |
T |
|
| Q |
211 |
gttgttgaattcgagctacaatgattttgttggagaaattcct |
253 |
Q |
| |
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| || | | ||||||||||||||||||||||||||||||| |
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| T |
16873477 |
gagattagacttgagctacaatgattttgttggagaaattcct |
16873519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 16872458 - 16872553
Alignment:
| Q |
6 |
cttctttttcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggta |
101 |
Q |
| |
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||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||| |||||| |
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| T |
16872458 |
cttctttctcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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