View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16768_high_37 (Length: 299)
Name: NF16768_high_37
Description: NF16768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16768_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 1834335 - 1834061
Alignment:
| Q |
18 |
aatacaaaattactaatacatagatatagataattcaaatttcttatagtaatttatcttcatgtgaggtggttcgatcatttgtgtttgtgttgattcc |
117 |
Q |
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| T |
1834335 |
aatacaaaattaatattacacagatatagataatacaaatttcttatagtaatttatcttcatgtgaggtggttcgatcatttgtgtttgtgttgattcc |
1834236 |
T |
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| Q |
118 |
atggcactctgaaagcatagttccttctccttgcatttctagctgatgaagcaacggttctttctctgacattgaaagacaattgatagctttgcatatg |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1834235 |
atggcactctgaaagcatacttccttctccttgcatttctagctgatgaagcaacggttctttctctgacattgaaagataattgatagctttgcatatg |
1834136 |
T |
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| Q |
218 |
attgtgtacttagcaactaaatccttgtaatgatttagtaatatgtccacatcttccattgctagatctctgctc |
292 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1834135 |
attgtgtacttagcaactaaatccttgtagtgatttagtaatatgtccacatcttccattgctagatctttgctc |
1834061 |
T |
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